Integrated meta-omics pipeline
seesaw_code project, see details in:
derived from the work done here https://github.com/snakemake-workflows/chipseq
A project for interactions with PubChem
Fork from https://gitlab.com/pd2af/pd2af
Scripts for the analysis of metagenomic data from the first week of life.
This is a pipeline to re-assemble the LAO isolate genomes. I could be potentially modified and applied to any other genome sequencing project.
Workflow for the COSMIC study samples. Based on IMP assemblies and automatic single sample binning, resulting bins are linked in different samples related to 1 patient (different time-points of fecal samples and samples from the mother).
LAO time series analyses