An automated workflow for constructing maps of molecular mechanisms for given diseases. It streamlines querying gene-disease and variant-disease associations, calculating enrichment of disease maps and pathways, and combining enriched diagrams with text mining data into a single map, meant for the MINERVA Platform.

This project hosts the JSON schemas used for representing the metadata of submissions to the ELIXIR translational data repository. It also provides validation utility methods.

Constraint-Based Reconstruction and EXascale Analysis

MINERVA (Molecular Interaction NEtwoRk VisuAlization) platform is a standalone webserver for visualization, exploration and management of molecular networks encoded in SBGN-compliant format. Documentation : https://minerva.pages.uni.lu/doc/

Pre-screening mass spectrometry data.

vue playground

Huge-scale, high-performance flow cytometry clustering in Julia

R code for an interface to MINERVA API and helper functions

Simple Git repository to demonstrate main features of Gitlab during the LCSB Core Tools training

Network Analyses - SpiecEasi The Rscripts and Snakefile herein can be used to run SpiecEasi for generating networks from taxonomic counts Dependencies snakemake >= 5.3.0 References (SpiecEasi)[https://github.com/zdk123/SpiecEasi]

Repository for building the official website of the R3 lab.

Here is the presence on the university website.

Repository for building the official website of the R3 lab.

University website.

This is a read-only mirror of the GitHub R package repository.