Issues · IMP / IMP

New issue

can't find trimmomatic

#153 · opened Feb 15, 2019 by Billy Taj
- 2
updated Apr 29, 2020
CalledProcessError in line 59 of /home/imp/code/rules/Preprocessing/filtering.rules:

#151 · opened Jan 16, 2019 by TANKENGUO
- 1
updated Jan 16, 2019
git clone results in HTTPS error

#149 · opened Dec 05, 2018 by Shea Connell
- 1
updated Jan 09, 2019
Does skip_preprocessing work (snakemake)?

#147 · opened Nov 16, 2018 by Javier Tamames
- 0
updated Nov 20, 2018
IMP-specific prokka conda recipe needed

#141 · opened Oct 02, 2018 by Cedric Laczny Important conda
- 1
updated Oct 04, 2018
Why are Fasta index and BAM index not created by distinct rules, but in the variant_calling rule?

#140 · opened Oct 01, 2018 by Cedric Laczny Important bug
- 1
updated Oct 01, 2018
Error in idba_hybrid_assembly_2

#139 · opened Sep 24, 2018 by Cedric Laczny bug
- 0
updated Sep 24, 2018
samtools-1.9 might break host filtering step

#137 · opened Sep 21, 2018 by Cedric Laczny Important Update
- 4
updated Oct 08, 2018
Accelerating the rRNA filtering step

#136 · opened Sep 14, 2018 by Cedric Laczny Enhancement
- 5
updated Oct 10, 2018
Read preprocessing using fastp

#135 · opened Aug 14, 2018 by Cedric Laczny Enhancement Potential request
- 1
updated Oct 08, 2018
idba hybrid assembly error

#134 · opened May 10, 2018 by Adam Blanchard
- 0
updated May 21, 2018
Error in cap3

#132 · opened Apr 13, 2018 by easternbluebird
- 5
updated May 06, 2018
Singularity support?

#131 · opened Mar 21, 2018 by Scott Daniel
- 2
updated May 03, 2018
How can I rebuild the docker file?

#130 · opened Mar 12, 2018 by easternbluebird
- 7
updated Mar 12, 2018
Update prokka

#129 · opened Mar 02, 2018 by easternbluebird
- 1
updated May 03, 2018
Update megahit

#128 · opened Mar 02, 2018 by easternbluebird
- 0
updated Mar 02, 2018
CalledProcessError in line 28 of /home/imp/code/rules/Analysis/visualize_mg.rules

#127 · opened Feb 14, 2018 by Fredrik Boulund
- 5
updated Feb 15, 2018
`metaquast` rule: ERROR! Failed downloading SILVA rRNA gene database

#126 · opened Feb 14, 2018 by Fredrik Boulund IMP 2.1 Update metaquast
- 8
updated Oct 19, 2018
Error when rebuilding docker container

#125 · opened Feb 12, 2018 by easternbluebird
- 2
updated Feb 12, 2018
Annotate rule fails

#124 · opened Feb 12, 2018 by Fredrik Boulund
- 2
updated Feb 14, 2018