Scripts for the analysis of metagenomic data from the first week of life.

Forked from Cosmic / Earliest

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160920_autocluster_contamination_1.R Loading commit data...
160920_autocluster_contamination_1000.R Loading commit data...
160921_autoClust_noConta_evil_1.R Loading commit data...
160921_autoClust_noConta_evil_1000.R Loading commit data...
161114_filter_gff_Pooled_noconta_1.R Loading commit data...
161129_filter_prokka_Pooled_noconta_1.R Loading commit data...
170606_filter_gff_Pooled_noconta_1000.R Loading commit data...
170606_filter_prokka_Pooled_noconta_1000.R Loading commit data...
Breadth.R Loading commit data...
Coverage_Bins.R Loading commit data...
KOanalysis.md Loading commit data...
README.md Loading commit data...
binning.md Loading commit data...
calculateContigLength.pl Loading commit data...
curation.md Loading commit data...
fastaExtractCutRibosomal1000.pl Loading commit data...
fastaExtractCutRibosomalNoCutoff.pl Loading commit data...
fastaExtractrRNA4dom.pl Loading commit data...
getSize Loading commit data...
hmmscan_addBest2gff.pl Loading commit data...
mOTUs.md Loading commit data...
phylophlan.md Loading commit data...
pogenom.md Loading commit data...
runIMP.md Loading commit data...
strainphlan.md Loading commit data...