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Computational models of different aspects of COVID-19

Integrated meta-omics pipeline

STAR and DESeq2

ELIXIR Luxembourg's GA4GH Beacon API implementation in Python

The back-end component of Fractalis.

Additional analyses for IMP manuscript

Scheduling assignments for Parkinson Research Clinic

Code used for the analysis of the RNA-seq, ATAC-seq and ChIP-seq datasets produced in this study. Original fastq files deposited in https://ega-archive.org/, under the accession number EGAD00001009288.

LAO time series analyses

A project for interactions with PubChem

Anna Chen: Black Box Optimization

Repository containing workflows for IMP3 downstream analyses Related project(s): NOMIS

Repository for all slides related to R3 courses.

Network Analyses - SpiecEasi The Rscripts and Snakefile herein can be used to run SpiecEasi for generating networks from taxonomic counts Dependencies snakemake >= 5.3.0 References (SpiecEasi)[https://github.com/zdk123/SpiecEasi]

Classifier scripts to identify prokaryote and eukaryotic contigs

Method testing and analyses of Oxford Nanopore Technology (ONT) sequencing runs Data obtained by sequencing "generous donor B" across several runs Original data prepared by Rashi (post-sequencing) Initial analyses performed by CCL