Issues · IMP / IMP3 · GitLab

Assembly/Analysis: replace perl scripts for contig stats

#52 · created Oct 05, 2021 by Valentina Galata discussion enhancement feature
- 0
updated Oct 05, 2021
Preprocessing: kneaddata for reads filtering

#51 · created Sep 30, 2021 by Valentina Galata discussion enhancement feature
- 0
updated Sep 30, 2021
Assembly stats: metaQUAST

#50 · created Sep 24, 2021 by Valentina Galata discussion enhancement feature
- 2
updated Sep 27, 2021
Unexpected behavior: `ancient` keyword may trigger Snakemake scheduler issues

#48 · created Sep 16, 2021 by Susheel Busi incident
- 0
updated Sep 16, 2021
Conda envs: smaller YAML files

#47 · created Sep 13, 2021 by Valentina Galata Overhaul discussion enhancement
- 0
updated Sep 13, 2021
Transcriptome assembly with rnaSPAdes

#46 · created Sep 10, 2021 by Valentina Galata bug
- 0
updated Sep 13, 2021
Unit testing, CI and merging

#45 · created Aug 27, 2021 by Valentina Galata Overhaul discussion enhancement test
- 1
updated Oct 26, 2021
Formatting convention

#43 · created Aug 27, 2021 by Valentina Galata Overhaul discussion documentation enhancement
- 3
updated Oct 08, 2021
Configuration: configs, profiles and launchers

#41 · created Aug 27, 2021 by Valentina Galata Overhaul discussion enhancement
- 1
updated Oct 08, 2021
nonpareil: simplify the rule

#38 · created Aug 23, 2021 by Valentina Galata Overhaul enhancement
- 1
updated Sep 24, 2021
Assembly: MG/MT assembly with MetaSPAdes

#36 · created Aug 23, 2021 by Valentina Galata enhancement feature
- 0
updated Aug 23, 2021
Config: use appropriate in-built data types 0 of 3 tasks completed

#35 · created Aug 20, 2021 by Valentina Galata Overhaul enhancement
- 3
updated Sep 24, 2021
SortMeRNA rule: minor bug and formatting

#33 · created Aug 18, 2021 by Valentina Galata Overhaul bug enhancement
- 2
updated Oct 08, 2021
Output: minimize output size

#32 · created Aug 17, 2021 by Valentina Galata discussion documentation enhancement feature
- 11
updated Aug 27, 2021
Input/output: work with compressed FASTQ files

#31 · created Aug 17, 2021 by Valentina Galata discussion enhancement
- 6
updated Aug 18, 2021
Taxonomy: kraken2 on reads: combine PE and SE reads

#27 · created Jul 20, 2021 by Valentina Galata enhancement
- 9
updated Aug 19, 2021
Feature/Doc: SE (metaT) as input

#25 · created Jul 08, 2021 by Valentina Galata documentation feature
- 2
updated Aug 23, 2021
Bug: config tmp folder is ignored during rRNA filtering

#24 · created Jun 09, 2021 by Valentina Galata Overhaul bug
- 0
updated Oct 08, 2021
PathoFact: include latest version

#23 · created Mar 01, 2021 by Valentina Galata Analysis & Binning updates feature update
- 1
updated Sep 27, 2021
Installation: downloading required databases 0 of 6 tasks completed

#22 · created Feb 11, 2021 by Valentina Galata Automated Setup enhancement installation
- 2
updated Sep 29, 2021