Commits · 4fd41ae5e003307b46aa50ab58bc07af3a6287f4 · R3 / legacy / bedtools2

Apr 17, 2014
- Final unit tests for merge, including stranded merge bug fixes. · 1b866b6e
  nkindlon authored 10 years ago
  
  1b866b6e
Apr 16, 2014
- Unit tests and bug fixes for merge release · 5eb3b68c
  nkindlon authored 10 years ago
  
  5eb3b68c
Apr 15, 2014
- Handling empty files with headers · fe5ea0ed
  nkindlon authored 10 years ago
  
  fe5ea0ed
Apr 09, 2014
- [TST] run shuffle tests. · bcbd75b7
  arq5x authored 10 years ago
  
  bcbd75b7
- [ENH] all shuffle with -incl to follow data distribution · 4642a149
  arq5x authored 10 years ago
  
  4642a149
Apr 08, 2014
- Merge converted to PFM, first check-in · f36d6db4
  nkindlon authored 10 years ago
  
  f36d6db4
Apr 05, 2014
- fix most filetype issues. intersect still raises error with empty files. · ed71c8e0
  arq5x authored 10 years ago
  
  ed71c8e0
Mar 21, 2014
- Access data via a DATA variable, allowing to override the location. · b9c717e3
  Charles Plessy authored 11 years ago
  
  b9c717e3
- Call bedtools via the BT variable, allowing to override the location. · c1fb7ab9
  Charles Plessy authored 11 years ago
  
  c1fb7ab9
Mar 18, 2014
- Fixed slop bug when slop factor exceeds MAX signed int. · 80820201
  nkindlon authored 11 years ago
  
  80820201
Mar 04, 2014
- Fixed intersect bug so that bed query with Bam DB correctly gives bed output. Added unit test. · 95098092
  nkindlon authored 11 years ago
  
  95098092
Feb 28, 2014
- Refactored KeyListOps, Context, mapFile for KeyListOps re-usability by other tools. · 2268ee4f
  nkindlon authored 11 years ago
  
  2268ee4f
Feb 19, 2014
- Created new KeyListOps class to replace vectorOps. Converted map tool to this. · 77c1bdad
  nkindlon authored 11 years ago
  
  77c1bdad
Feb 06, 2014
- Added unit test to intersect for gff files. · bf296c8c
  nkindlon authored 11 years ago
  
  bf296c8c
- Fixed a cut/paste error in unit test comment. · d92fdfdb
  nkindlon authored 11 years ago
  
  d92fdfdb
- Refactored contexts for validation, added unit tests, enabled -plit for map. · b912d88c
  nkindlon authored 11 years ago
  
  b912d88c
Feb 02, 2014
- fix bug in merge output and cleanup jaccard test · 526119e7
  arq5x authored 11 years ago
  
  526119e7
- [ENH] correct Jaccard output header · b77e0ebb
  arq5x authored 11 years ago
  
  b77e0ebb
- [ENH] add test when -fullHeader not provided · 4bbe86d3
  arq5x authored 11 years ago
  
  4bbe86d3
- [TST] add tests for map · 35619c1d
  arq5x authored 11 years ago
  
  35619c1d
Feb 01, 2014
- add option -fullHeader for fasta files · accf0a13
  Timothee Flutre authored 11 years ago
  
  accf0a13
- add files to test getfasta with full header · d5ecb195
  Timothee Flutre authored 11 years ago
  
  d5ecb195
Jan 31, 2014
- Forgot new file for unit tests · f23b047f
  nkindlon authored 11 years ago
  
  f23b047f
- Corrections and unit tests for split bug. · 88ba7f18
  nkindlon authored 11 years ago
  
  88ba7f18
Jan 27, 2014
- Added another file to intersect unit tests for split blocks testing. · 0330f301
  nkindlon authored 11 years ago
  
  0330f301
Jan 22, 2014
- New unit test for -split -wo · 69fda88a
  nkindlon authored 11 years ago
  
  69fda88a
Jan 20, 2014
- [TST] add new tests for map · 6f746dc3
  arq5x authored 11 years ago
  
  6f746dc3
Jan 11, 2014
- tweak · ce2d411b
  arq5x authored 11 years ago
  
  ce2d411b
- [TST] new unit tests for proper field reporting for BED* intersections · 420159aa
  arq5x authored 11 years ago
  
  420159aa
Jan 03, 2014
- Added fix for Bam files with empty headers. Added test for this to unit test. · a16562f4
  nkindlon authored 11 years ago
  
  a16562f4
Dec 16, 2013
- ifdef'd out DualQueue and removed usages of it to fix compiler errors with clang on Mac OS X · a12d9422
  nkindlon authored 11 years ago
  
  a12d9422
Dec 09, 2013
- [TST] cleanup sample test · db638be7
  arq5x authored 11 years ago
  
  db638be7
- [TST] tests for reldist · 8085664c
  arq5x authored 11 years ago
  
  8085664c
- [TST] resolve platform-specific issues with GNU cut. · fedbb693
  arq5x authored 11 years ago
  
  fedbb693
Dec 06, 2013
- Actually needed j1.bed in test/intersect. · b94d9f5e
  nkindlon authored 11 years ago
  
  b94d9f5e
- Fixed sample and intersect unit tests; minor code changes; new repository. · 55c53173
  nkindlon authored 11 years ago
  
  55c53173
Dec 05, 2013
- Added unit tests for sampleFile program. · 5014f649
  nkindlon authored 11 years ago
  
  5014f649
Nov 18, 2013
- Added unit test for unrecognized arguments. · 3b9fc3e1
  nkindlon authored 11 years ago
  
  3b9fc3e1
- Added unit test and changed error message for empty files. · 19b3e29f
  nkindlon authored 11 years ago
  
  19b3e29f
Nov 14, 2013

New unit tests for sort order enforcement, non-existant file. Also added... · 008fee8e

nkindlon authored 11 years ago

New unit tests for sort order enforcement, non-existant file. Also added performance test for file input and compression types.

008fee8e