.gitignore

README.md

src/sampleFile/SampleFile.cpp

src/sampleFile/SampleFile.h

src/sampleFile/sampleMain.cpp

src/utils/Contexts/Context.cpp

src/utils/Contexts/Context.h

src/utils/FileRecordTools/RecordOutputMgr.cpp

test/intersect/a_withLargeHeader.bed

test/intersect/a_withLargeHeader_bgzipped.bed.gz

test/intersect/a_withLargeHeader_gzipped.bed.gz

test/intersect/j1.bed

test/intersect/mapped_and_unmapped.sam

test/intersect/new_test-intersect.sh

test/intersect/test-intersect.sh

test/jaccard/obs1

test/jaccard/obs2

test/sample/sample-intersect.sh

test/sample/sample-intersect.sh~

test/sample/sample_help_withoutVersion.txt