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Commit 8085664c authored by arq5x's avatar arq5x
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[TST] tests for reldist

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data/aluY.chr1.bed.gz 0 → 100644
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data/gerp.chr1.bed.gz 0 → 100644
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data/refseq.chr1.exons.bed.gz 0 → 100644
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data/simpleRepeats.chr1.bed.gz 0 → 100644
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test/reldist/test-reldist.sh
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− 109
View file @ 8085664c
......@@ -16,9 +16,9 @@ check()
echo " reldist.t01...\c"
echo \
"reldist count total fraction
0.00 420889 420889 1.000" > exp
$BT reldist -a ../../data/refseq.hg19.exons.bed.gz \
-b ../../data/refseq.hg19.exons.bed.gz > obs
0.00 43424 43424 1.000" > exp
$BT reldist -a ../../data/refseq.chr1.exons.bed.gz \
-b ../../data/refseq.chr1.exons.bed.gz > obs
check obs exp
rm obs exp
......@@ -29,59 +29,58 @@ rm obs exp
echo " reldist.t02...\c"
echo \
"reldist count total fraction
0.00 1930 420584 0.005
0.01 4937 420584 0.012
0.02 6021 420584 0.014
0.03 6774 420584 0.016
0.04 7403 420584 0.018
0.05 7152 420584 0.017
0.06 7824 420584 0.019
0.07 7818 420584 0.019
0.08 7679 420584 0.018
0.09 8275 420584 0.020
0.10 7886 420584 0.019
0.11 8308 420584 0.020
0.12 8335 420584 0.020
0.13 8532 420584 0.020
0.14 8486 420584 0.020
0.15 8335 420584 0.020
0.16 8207 420584 0.020
0.17 8674 420584 0.021
0.18 8541 420584 0.020
0.19 8795 420584 0.021
0.20 8718 420584 0.021
0.21 8731 420584 0.021
0.22 8464 420584 0.020
0.23 8627 420584 0.021
0.24 8766 420584 0.021
0.25 8927 420584 0.021
0.26 8860 420584 0.021
0.27 8876 420584 0.021
0.28 9285 420584 0.022
0.29 8882 420584 0.021
0.30 9092 420584 0.022
0.31 8882 420584 0.021
0.32 8887 420584 0.021
0.33 9296 420584 0.022
0.34 8895 420584 0.021
0.35 8964 420584 0.021
0.36 9106 420584 0.022
0.37 9377 420584 0.022
0.38 9199 420584 0.022
0.39 9240 420584 0.022
0.40 9268 420584 0.022
0.41 9443 420584 0.022
0.42 9541 420584 0.023
0.43 9287 420584 0.022
0.44 8998 420584 0.021
0.45 9238 420584 0.022
0.46 8892 420584 0.021
0.47 8859 420584 0.021
0.48 9033 420584 0.021
0.49 9028 420584 0.021
0.50 11 420584 0.000" > exp
$BT reldist -a ../../data/refseq.hg19.exons.bed.gz \
-b ../../data/aluY.hg19.bed.gz > obs
0.00 164 43408 0.004
0.01 551 43408 0.013
0.02 598 43408 0.014
0.03 637 43408 0.015
0.04 793 43408 0.018
0.05 688 43408 0.016
0.06 874 43408 0.020
0.07 765 43408 0.018
0.08 685 43408 0.016
0.09 929 43408 0.021
0.10 876 43408 0.020
0.11 959 43408 0.022
0.12 860 43408 0.020
0.13 851 43408 0.020
0.14 903 43408 0.021
0.15 893 43408 0.021
0.16 883 43408 0.020
0.17 828 43408 0.019
0.18 917 43408 0.021
0.19 875 43408 0.020
0.20 897 43408 0.021
0.21 986 43408 0.023
0.22 903 43408 0.021
0.23 944 43408 0.022
0.24 904 43408 0.021
0.25 867 43408 0.020
0.26 943 43408 0.022
0.27 933 43408 0.021
0.28 1132 43408 0.026
0.29 881 43408 0.020
0.30 851 43408 0.020
0.31 963 43408 0.022
0.32 950 43408 0.022
0.33 965 43408 0.022
0.34 907 43408 0.021
0.35 884 43408 0.020
0.36 965 43408 0.022
0.37 944 43408 0.022
0.38 911 43408 0.021
0.39 939 43408 0.022
0.40 921 43408 0.021
0.41 950 43408 0.022
0.42 935 43408 0.022
0.43 919 43408 0.021
0.44 915 43408 0.021
0.45 934 43408 0.022
0.46 843 43408 0.019
0.47 850 43408 0.020
0.48 1006 43408 0.023
0.49 937 43408 0.022" > exp
$BT reldist -a ../../data/refseq.chr1.exons.bed.gz \
-b ../../data/aluY.chr1.bed.gz > obs
check obs exp
rm obs exp
......@@ -93,58 +92,58 @@ rm obs exp
echo " reldist.t03...\c"
echo \
"reldist count total fraction
0.00 156776 396736 0.395
0.01 33579 396736 0.085
0.02 17808 396736 0.045
0.03 11826 396736 0.030
0.04 8961 396736 0.023
0.05 7302 396736 0.018
0.06 5994 396736 0.015
0.07 5357 396736 0.014
0.08 5032 396736 0.013
0.09 4415 396736 0.011
0.10 4411 396736 0.011
0.11 4062 396736 0.010
0.12 3741 396736 0.009
0.13 3760 396736 0.009
0.14 3501 396736 0.009
0.15 3394 396736 0.009
0.16 3539 396736 0.009
0.17 3442 396736 0.009
0.18 3500 396736 0.009
0.19 3072 396736 0.008
0.20 3713 396736 0.009
0.21 3249 396736 0.008
0.22 3328 396736 0.008
0.23 3271 396736 0.008
0.24 3017 396736 0.008
0.25 3756 396736 0.009
0.26 3242 396736 0.008
0.27 3057 396736 0.008
0.28 3519 396736 0.009
0.29 3222 396736 0.008
0.30 3529 396736 0.009
0.31 3284 396736 0.008
0.32 3387 396736 0.009
0.33 3231 396736 0.008
0.34 3263 396736 0.008
0.35 3421 396736 0.009
0.36 3529 396736 0.009
0.37 3376 396736 0.009
0.38 3414 396736 0.009
0.39 3183 396736 0.008
0.40 3855 396736 0.010
0.41 3402 396736 0.009
0.42 3803 396736 0.010
0.43 3458 396736 0.009
0.44 3594 396736 0.009
0.45 3654 396736 0.009
0.46 3489 396736 0.009
0.47 3394 396736 0.009
0.48 3862 396736 0.010
0.49 2957 396736 0.007
0.50 805 396736 0.002" > exp
$BT reldist -a ../../data/refseq.hg19.exons.bed.gz \
-b ../../data/29way_pi.conservation.hg19.bed.gz > obs
0.00 20629 43422 0.475
0.01 2629 43422 0.061
0.02 1427 43422 0.033
0.03 985 43422 0.023
0.04 897 43422 0.021
0.05 756 43422 0.017
0.06 667 43422 0.015
0.07 557 43422 0.013
0.08 603 43422 0.014
0.09 487 43422 0.011
0.10 461 43422 0.011
0.11 423 43422 0.010
0.12 427 43422 0.010
0.13 435 43422 0.010
0.14 375 43422 0.009
0.15 367 43422 0.008
0.16 379 43422 0.009
0.17 371 43422 0.009
0.18 346 43422 0.008
0.19 389 43422 0.009
0.20 377 43422 0.009
0.21 411 43422 0.009
0.22 377 43422 0.009
0.23 352 43422 0.008
0.24 334 43422 0.008
0.25 315 43422 0.007
0.26 370 43422 0.009
0.27 330 43422 0.008
0.28 330 43422 0.008
0.29 280 43422 0.006
0.30 309 43422 0.007
0.31 326 43422 0.008
0.32 287 43422 0.007
0.33 294 43422 0.007
0.34 306 43422 0.007
0.35 307 43422 0.007
0.36 309 43422 0.007
0.37 271 43422 0.006
0.38 293 43422 0.007
0.39 311 43422 0.007
0.40 331 43422 0.008
0.41 320 43422 0.007
0.42 299 43422 0.007
0.43 327 43422 0.008
0.44 321 43422 0.007
0.45 326 43422 0.008
0.46 306 43422 0.007
0.47 354 43422 0.008
0.48 365 43422 0.008
0.49 336 43422 0.008
0.50 38 43422 0.001" > exp
$BT reldist -a ../../data/refseq.chr1.exons.bed.gz \
-b ../../data/gerp.chr1.bed.gz > obs
check obs exp
rm obs exp
\ No newline at end of file
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