Commits · 0b41d1a7cbe476950a4ac17ef6dfef9f6832284b · R3 / legacy / bedtools2

May 02, 2014
- Merge pull request #69 from nkindlon/master · 0b41d1a7
  Aaron Quinlan authored 10 years ago
  
  added changes to stop CLANG compiler warnings.
  0b41d1a7
Apr 30, 2014
- Added unit test to merge to confirm precision · be32e1c1
  nkindlon authored 10 years ago
  
  be32e1c1
- added changes to stop CLANG compiler warnings. · e8667853
  nkindlon authored 10 years ago
  
  e8667853
- Merge pull request #68 from nkindlon/master · 656fd843
  Aaron Quinlan authored 10 years ago
  
  Added stranded info to jaccard and merge help, fixed stranded jaccard bu...
  656fd843
- Added stranded info to jaccard and merge help, fixed stranded jaccard bug · 39fffc97
  nkindlon authored 10 years ago
  
  39fffc97
- [DOC] fix formatting for unionbedg · aece1e8f
  arq5x authored 10 years ago
  
  aece1e8f
Apr 29, 2014
- [DOC] fix formatting for unionbedg · 3f03f6d0
  arq5x authored 10 years ago
  
  3f03f6d0
Apr 25, 2014
- Merge pull request #67 from nkindlon/master · 77fae721
  Aaron Quinlan authored 10 years ago
  
  Added jaccard w/ -split and unit tests. Fixed Bam input as bam output bu...
  77fae721
- Added jaccard w/ -split and unit tests. Fixed Bam input as bam output bug,... · e2be0789
  nkindlon authored 10 years ago
  
  Added jaccard w/ -split and unit tests. Fixed Bam input as bam output bug, added unit test in sample.
  e2be0789
Apr 24, 2014
- Merge pull request #64 from nkindlon/master · d42edc99
  Aaron Quinlan authored 10 years ago
  
  Fixed merge bugs w/ sort order and chrom change, added unit tests
  d42edc99
- Made Merge only print Bed3 output for BAM, added unit test · bbda1f41
  nkindlon authored 10 years ago
  
  bbda1f41
- merge bug fixes and unit tests · b740bbf4
  nkindlon authored 10 years ago
  
  b740bbf4
Apr 23, 2014
- Test commit · 4ef1d94e
  nkindlon authored 10 years ago
  
  4ef1d94e
Apr 22, 2014
- Update BlockMgr.cpp · 70345fd5
  Aaron Quinlan authored 10 years ago
  
  70345fd5
- Merge pull request #63 from lindenb/fixBlockedIntervals · ba984f32
  Aaron Quinlan authored 10 years ago
  
  support for operators 'X' and '=' in method BlockedIntervals.cpp/GetBamB...
  ba984f32
- support for operators 'X' and '=' in method BlockedIntervals.cpp/GetBamBlocks · fd7becfc
  lindenb authored 10 years ago
  
  fd7becfc
Apr 17, 2014
- allow command line includes for make · 57ce8d4e
  arq5x authored 10 years ago
  
  57ce8d4e
- cleanup unit tests. · 17ec9aa9
  arq5x authored 10 years ago
  
  17ec9aa9
- cleanup KeyListOps help formatting · c5d1e72d
  arq5x authored 10 years ago
  
  c5d1e72d
- add missing help menu items (-S -header) to merge · 4fd41ae5
  arq5x authored 10 years ago
  
  4fd41ae5
- allow merge -d to have negative values for minimum overlap. · d0fe42c2
  arq5x authored 10 years ago
  
  d0fe42c2
- Merge pull request #53 from nkindlon/master · fccfbfbd
  Aaron Quinlan authored 10 years ago
  
  Merge converted to PFM, first check-in
  fccfbfbd
- Merge branch 'merge' · 3b04625a
  nkindlon authored 10 years ago
  
  3b04625a
- Final unit tests for merge, including stranded merge bug fixes. · 1b866b6e
  nkindlon authored 10 years ago
  
  1b866b6e
Apr 16, 2014
- Merge branch 'merge' · 9eb4337c
  nkindlon authored 10 years ago
  
  9eb4337c
- Unit tests and bug fixes for merge release · 5eb3b68c
  nkindlon authored 10 years ago
  
  5eb3b68c
Apr 15, 2014
- Fixed merge conflicts · 8284c923
  nkindlon authored 10 years ago
  
  8284c923
- Merge branch 'master' of https://github.com/nkindlon/bedtools2 · 8b6ed4be
  nkindlon authored 10 years ago
  
  8b6ed4be
- Merge remote-tracking branch 'upstream/master' into merge · eb2f6143
  nkindlon authored 10 years ago
  
  eb2f6143
- Handling empty files with headers · fe5ea0ed
  nkindlon authored 10 years ago
  
  fe5ea0ed
Apr 09, 2014
- [TST] run shuffle tests. · bcbd75b7
  arq5x authored 10 years ago
  
  bcbd75b7
- [ENH] all shuffle with -incl to follow data distribution · 4642a149
  arq5x authored 10 years ago
  
  4642a149
Apr 08, 2014
- Merge converted to PFM, first check-in · f36d6db4
  nkindlon authored 10 years ago
  
  f36d6db4
Apr 05, 2014
- fix most filetype issues. intersect still raises error with empty files. · ed71c8e0
  arq5x authored 10 years ago
  
  ed71c8e0
Mar 25, 2014
- remove extraneous header tab · 377f1b11
  arq5x authored 11 years ago
  
  377f1b11
Mar 21, 2014
- tweak README · 9e50ca3e
  arq5x authored 11 years ago
  
  9e50ca3e
- [DOC] add new usage examples from the wild · e7f41f5e
  arq5x authored 11 years ago
  
  e7f41f5e
- [DOC] add new usage examples from the wild · 7c29e823
  arq5x authored 11 years ago
  
  7c29e823
- Merge pull request #48 from Debian/suggestion-for-testsuite · 67a81acd
  Aaron Quinlan authored 11 years ago
  
  Patches to make the testsuite easier to move.
  67a81acd
- Access data via a DATA variable, allowing to override the location. · b9c717e3
  Charles Plessy authored 11 years ago
  
  b9c717e3