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Commit aece1e8f authored by arq5x's avatar arq5x
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[DOC] fix formatting for unionbedg

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docs/content/tools/unionbedg.rst
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......@@ -3,7 +3,7 @@
###############
*unionbedg*
###############
**unionBedGraphs** combines multiple BEDGRAPH files into a single file such that one can directly
**bedtools unionbedg** combines multiple BEDGRAPH files into a single file such that one can directly
compare coverage (and other text-values such as genotypes) across multiple sample
......@@ -13,7 +13,7 @@ Usage and option summary
Usage:
::
unionBedGraphs [OPTIONS] -i FILE1 FILE2 FILE3 ... FILEn
bedtools unionbedg [OPTIONS] -i FILE1 FILE2 FILE3 ... FILEn
=========================== ===============================================================================================================================================================================================================
Option Description
......@@ -51,7 +51,7 @@ Default behavior
cat sizes.txt
chr1 5000
unionBedGraphs -i 1.bg 2.bg 3.bg
bedtools unionbedg -i 1.bg 2.bg 3.bg
chr1 900 1000 0 60 0
chr1 1000 1500 10 60 0
chr1 1500 1600 0 60 0
......@@ -68,7 +68,7 @@ Default behavior
::
unionBedGraphs -i 1.bg 2.bg 3.bg -header
bedtools unionbedg -i 1.bg 2.bg 3.bg -header
chrom start end 1 2 3
chr1 900 1000 0 60 0
chr1 1000 1500 10 60 0
......@@ -87,7 +87,7 @@ Default behavior
::
unionBedGraphs -i 1.bg 2.bg 3.bg -header -names WT-1 WT-2 KO-1
bedtools unionbedg -i 1.bg 2.bg 3.bg -header -names WT-1 WT-2 KO-1
chrom start end WT-1 WT-2 KO-1
chr1 900 1000 0 60 0
chr1 1000 1500 10 60 0
......@@ -108,7 +108,7 @@ Default behavior
::
unionBedGraphs -i 1.bg 2.bg 3.bg -empty -g sizes.txt -header
bedtools unionbedg -i 1.bg 2.bg 3.bg -empty -g sizes.txt -header
chrom start end WT-1 WT-2 KO-1
chrom start end 1 2 3
chr1 0 900 0 0 0
......@@ -131,7 +131,7 @@ Default behavior
::
unionBedGraphs -i 1.bg 2.bg 3.bg -empty -g sizes.txt -header -filler N/A
bedtools unionbedg -i 1.bg 2.bg 3.bg -empty -g sizes.txt -header -filler N/A
chrom start end WT-1 WT-2 KO-1
chrom start end 1 2 3
chr1 0 900 N/A N/A N/A
......@@ -166,7 +166,7 @@ Use BEDGRAPH files with non-numeric values.
chr1 0 1 A/G
chr1 5 6 C/T
unionBedGraphs -i 1.snp.bg 2.snp.bg 3.snp.bg -filler -/-
bedtools unionbedg -i 1.snp.bg 2.snp.bg 3.snp.bg -filler -/-
chr1 0 1 A/G C/C A/G
chr1 5 6 C/T -/- C/T
chr1 7 8 -/- T/T -/-
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