src/intersectFile/intersectFile.cpp

src/mapFile/mapMain.cpp

src/utils/BinTree/BinTree.cpp

src/utils/Contexts/ContextBase.cpp

src/utils/Contexts/ContextMerge.cpp

src/utils/FileRecordTools/FileReaders/BufferedStreamMgr.cpp

src/utils/FileRecordTools/FileReaders/InputStreamMgr.cpp

src/utils/FileRecordTools/FileReaders/InputStreamMgr.h

src/utils/FileRecordTools/FileRecordMgr.cpp

src/utils/FileRecordTools/Records/EmptyRecord.cpp

src/utils/FileRecordTools/Records/EmptyRecord.h

src/utils/FileRecordTools/Records/Makefile

src/utils/FileRecordTools/Records/RecordMgr.cpp

src/utils/FileRecordTools/Records/RecordMgr.h

src/utils/NewChromsweep/NewChromsweep.cpp

src/utils/RecordOutputMgr/RecordOutputMgr.cpp

src/utils/fileType/FileRecordTypeChecker.cpp

src/utils/fileType/FileRecordTypeChecker.h

test/intersect/headerOnly.vcf

test/intersect/new_test-intersect.sh