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Commit c6cf8c95 authored by Piotr Gawron's avatar Piotr Gawron
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removing unused imports

parent 9b038127
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2 merge requests!630WIP: Resolve "The privileges of a new user are not saved in some cases",!560Resolve "add support for modifications and states in sbml export/import"
......@@ -18,6 +18,11 @@ import lcsb.mapviewer.model.map.species.field.TranscriptionSite;
*
*/
public final class MultiPackageNamingUtils {
/**
* Default logger.
*/
@SuppressWarnings("unused")
private static Logger logger = Logger.getLogger(MultiPackageNamingUtils.class);
private static final String MINERVA_MODIFICATION_TYPE_PREFIX = "minerva_modification_type_";
......
......@@ -3,9 +3,7 @@ package lcsb.mapviewer.converter.model.sbml;
import java.io.UnsupportedEncodingException;
import java.util.Arrays;
import java.util.Collection;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Map;
import java.util.Set;
import javax.xml.stream.XMLStreamException;
......@@ -19,7 +17,6 @@ import org.sbml.jsbml.ext.layout.Dimensions;
import org.sbml.jsbml.ext.layout.Layout;
import org.sbml.jsbml.ext.layout.LayoutModelPlugin;
import org.sbml.jsbml.ext.multi.MultiModelPlugin;
import org.sbml.jsbml.ext.multi.MultiSpeciesType;
import org.sbml.jsbml.ext.render.GlobalRenderInformation;
import org.sbml.jsbml.ext.render.RenderLayoutPlugin;
......@@ -142,15 +139,12 @@ public class SbmlExporter {
return layout;
}
private Map<Class<?>, MultiSpeciesType> speciesTypeByClass = new HashMap<>();
protected MultiModelPlugin createSbmlMultiPlugin(Model result) {
MultiModelPlugin multiPlugin = new MultiModelPlugin(result);
result.addExtension("multi", multiPlugin);
return multiPlugin;
}
/**
* Creates SBML render plugin for SBML model.
*
......
......@@ -17,7 +17,6 @@ import org.sbml.jsbml.Species;
import org.sbml.jsbml.SpeciesReference;
import org.sbml.jsbml.ext.layout.AbstractReferenceGlyph;
import org.sbml.jsbml.ext.layout.Curve;
import org.sbml.jsbml.ext.layout.Layout;
import org.sbml.jsbml.ext.layout.LineSegment;
import org.sbml.jsbml.ext.layout.Point;
import org.sbml.jsbml.ext.layout.ReactionGlyph;
......@@ -51,10 +50,15 @@ public class SbmlReactionExporter extends SbmlBioEntityExporter<Reaction, org.sb
/**
* Default class logger.
*/
@SuppressWarnings("unused")
private static Logger logger = Logger.getLogger(SbmlReactionExporter.class);
private SbmlBioEntityExporter<lcsb.mapviewer.model.map.species.Species, Species> speciesExporter;
private SbmlBioEntityExporter<Compartment, org.sbml.jsbml.Compartment> compartmentExporter;
private Map<ReactionNode, SimpleSpeciesReference> speciesReferenceByReactionNode = new HashMap<>();
public SbmlReactionExporter(Model sbmlModel, lcsb.mapviewer.model.map.model.Model minervaModel,
SbmlBioEntityExporter<lcsb.mapviewer.model.map.species.Species, Species> speciesExporter,
Collection<SbmlExtension> sbmlExtensions,
......@@ -64,8 +68,6 @@ public class SbmlReactionExporter extends SbmlBioEntityExporter<Reaction, org.sb
this.compartmentExporter = compartmentExporter;
}
Map<ReactionNode, SimpleSpeciesReference> speciesReferenceByReactionNode = new HashMap<>();
@Override
public org.sbml.jsbml.Reaction createSbmlElement(Reaction reaction) throws InconsistentModelException {
String reactionId = getReactionId(reaction);
......
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