Tags give the ability to mark specific points in history as being important
  • v15.1.0-beta.0
    Release v15.1.0-beta.0
    • Small improvement: annotations are exported in SBGN extension that can be opened by newt (#1296)
    • Small improvement: plugin API allows to add/remove data overlays (#1153)
    • Small improvement: logged user can change password (#1119)
    • Small improvement: possibility to reset password added (#275)
    • Small improvement: import SBML uses render:fill color for compartment (#1254)
    • Small improvement: in SBML render stroke color for glyphs is used for defining font color
    • Small improvement: when SBML with layout contains different glyph text and species name those two values are assigned to name and full name (#1275)
    • Small improvement: process rectangle can be specified in SBML with reaction bounding box (#1292)
    • Small improvement: API allows to remove plugin data entry (#1298)
    • Small improvement: transport/translation/transcription reactions are exported to SBGN PD (#1302)
    • Small improvement: Unknown Transition Reaction is exported to GPML as CONVERSION (#1300)
    • Small improvement: when uploading complex map with images warnings are raised if images are not referenced in coords.txt file (#1308)
    • Small improvement: hitting enter after filling credentials automatically tries to log in (#1312)
    • Small improvement: rest API provides information about element glyph and z index
    • Small improvement: pathways with glyphs and z index below 0 are not clickable (#1314)
    • Small improvement: Modifier Reaction from CellDesigner are exported properly to SBGN-ML PD (#1320)
    • Small improvement: SBGN notes are imported properly (#1319)
    • Small improvement: SBGN notes are exported properly (#1319)
    • Small improvement: possibility to customize request account email title (#1330)
    • Bug fix: export to image from selected polygon contained all elements inside rectangle bounded by the polygon coordinates (#1096)
    • Bug fix: continuous refreshing list of project when uploading/removing project did not allow to change other project details (#996)
    • Bug fix: when multi extension did not contain species type list import of SBML crashed
    • Bug fix: when content of element popover is too wide the scrollbar is visible (#1269)
  • v15.0.2
    Release v15.0.2
    • Bug fix: annotations using identifiers.org urls sometimes required http and sometimes required https url (#1297)
    • Bug fix: map notes were not exported to GPML
    • Bug fix: reaction notes were not imported from GPML
    • Bug fix: export of notes could create invalid GPML file (#1299)
    • Bug fix: there was an issue with exporting color and line type of reaction additional reactant/product (#1303)
    • Bug fix: coordinates of children in compact complexes in CellDesigner were wrong (#1304)
    • Bug fix: user data overlays were not removed when user was deleted (#1301)
    • Bug fix: kinetic parameters exported to SBML created invalid SBML file (#1305)
    • Bug fix: text area were not converted to GPML using conversion API (#1306)
    • Bug fix: name provided by user in comment dialog was not visible in admin panel (#1245)
    • Bug fix: bqmodel:isInstanceOf and bqmodel:hasInstance relation types were not handled properly (#1281)
    • Bug fix: "bqmodel:isInstanceOf", "bqmodel:hasInstance", "bqbiol:hasProperty", "bqbiol:isPropertyOf" and "bqbiol:hasTaxon" relation types are not supported by CellDedigner and are now transformed during export into something readable by CellDesigner (#1281)
    • Bug fix: at random time points there was an issue with cached data (#1323)
    • Bug fix: connection to DAPI timeouted sometimes which resulted in error when checking for all chemicals for specfific protein (#1324)
    • Bug fix: complex/compartment with empty name was incorrectly exported to CellDesigner (#1310)
  • v15.0.1
    Release v15.0.1
    • Bug fix: when there was problem with DAPI minerva threw unexpected error (#1316)
    • Bug fix: DAPI connection must go over HTTPS (#1316)
  • v15.0.0
    Release v15.0.0
    • Backward incompatible: old connection to CTD is removed and replaced with new Data-API interface that closely check license compliance
    • Backward incompatible: old connection to DrugBank is removed and replaced with new Data-API interface that closely check license compliance
    • Backward incompatible: some custom fields (like transparency zoom level) are not exported to CellDesigner file (#1071)
    • Backward incompatible: truncation/association/dissociation points are represented as a dot in all new images/uploaded maps (#1265)
    • Backward incompatible: and/split points are represented as a dot in all new images/uploaded maps (#1253)
    • Backward incompatible: reaction will be on top of elements in maps uploaded from formats that does not contain z-index (#1251)
    • Backward incompatible: when uploading complex map with submap there is no possibility to change submap name (#947)
    • Improvement: logs provided for validation data model are structured (#325)
    • Improvement: import/export of GPML implemented
    • Improvement: API allows to merge files (#1208)
    • Improvement: export to SBGN/SBML/GPML format provides popup with list of warnings occurred in the translation process (#713)
    • Improvement: support for rendering colors in SBGNML added (#1009)
    • Small improvement: compartments in not layouted SBML file are more scattered (#326)
    • Small improvement: when downloading a map results in too big file (>1MB) the content is compressed and returned as a zip file (#348)
    • Small improvement: confirmation dialog when removing "general view" overlays contain proper warning (#809)
    • Small improvement: CellDesigner text area object can have "BorderColor" property defined (#806)
    • Small improvement: list of submaps is sorted alphabetically (#962)
    • Small improvement: notification about new releases of minerva added in admin panel (#961)
    • Small improvement: font awesome upgraded to 5.1 (new icon styles)
    • Small improvement: header contains login/logout button and access admin panel button (#982)
    • Small improvement: autocomplete for chemical searches is enabled (#841)
    • Small improvement: "bqbiol:occursIn" and "bqmodel:isDerivedFrom" and handled in annotations (#1190),
    • Small improvement: 3DMET, Evidence Code Ontology, Kegg Glycan, LipidBank, Chemical Component Dictionary annotations are supported (#1190)
    • Small improvement: SWISS-model annotations are supported (#1249),
    • Small Improvement: SBO annotation support added (#1194)
    • Small improvement: support for annotations added: ChemIDplus, EcoGene, FlyBase, GeneDB, Intact, Kegg Drug, KNApSAcK, LIPID MAPS, NCBI Protein, PATO, RGD, SPIKE, TTD Drug, ZFIN BioEntity
    • Small Improvement: additional annotation uri qualifiers added: hasProperty, isPropertyOf (#1193)
    • Small improvement: small css improvement in info tab (#1104)
    • Small improvement: import/export to SBML of unit of information obtained from SBGN source is supported (#1088)
    • Small improvement: rounded rectangle is used to visualize Simple chemicals in SBGN-like view according to the newest SBGN specification (#1094)
    • Small improvement: after removing project is confirmed the system enforce waiting until remove status is confirmed (#1106)
    • Small improvement: when typing drug, list of autocomplete drugs should be available limited to the drugs that target something on the map (#641)
    • Small improvement: data not compliant with database constraints (for instance too long species identifiers) will be automatically adjust instead of crashing project upload (#1041)
    • Small improvement: reaction lines in SBML files without layout are set outside of the species (not in the center, #1023)
    • Small improvement: sort order of tables in admin panel is preserved among sessions (#836)
    • Small improvement: simple molecules in SBGN compliant view are drawn as ellipses not circles (#796)
    • Small improvement: uploaded map is automatically cached (#983)
    • Small improvement: molart updated to version 1.5.0: Ability to show unobserved structure regions in the sequence view.
    • Small improvement: list of genomes is automatically refreshed during genome upload (#820)
    • Small improvement: items in context menu are reorganized (#787)
    • Small improvement: CellDesigner files from version 2.5 should be parseable
    • Small improvement: plugins in admin panel can be revalidated to update info about the plugins (name, version)
    • Small improvement: there is possibility to define default plugins loaded with every opening of a map (#967)
    • Bug fix: pathways are visualized in image converter (#1266)
    • Bug fix: conversion of file containing BOM did not work (#1264)
    • Bug fix: proper color is parsed from CellDesigner species marked as 'brief'
    • Bug fix: upload of SBGN files didn't process unicode characters properly when server was running with encoding different than UTF-8 (#1142)
    • Bug fix: kinetic equation in reaction that referenced complex (instead of target species) crashed CellDesigner upload (#1212)
    • Bug fix: kinetic equation in SBML that used speciesReference id crashed upload (#1190)
    • Bug fix: layout reaction with duplicated reaction element crashed SBML upload (#1190)
    • Bug fix: conversion from SBML to CellDesigner escaped "<" twice (#1228)
    • Bug fix: Select annotation dialog width is at least 840px (#1210)
    • Bug fix: modifiers joined by operator were exported to SBML without line corresponding to the operator (#1199)
    • Bug fix: first state variable that does not match modification residue is translated to structural state when importing from SBGNML (#1088)
    • Bug fix: exported SBML was not compliant with the standard when element name was empty (#1147)
    • Bug fix: invalid data overlays in uploaded zip file created "valid" project that could not be opened (#1086)
    • Bug fix: cardinality in SBGN-like view is drawn in separate unit (#1157)
    • Bug fix: notes from SBML are parsed with all html tags (#1196)
    • Bug fix: converter API append conversion warnings to generated output notes
    • Bug fix: newt use incorrect attributes when exporting render information that could not be parsed by minerva (#1127)
    • Bug fix: catalysis to protein was not parsed from SBGN file (#1116)
    • Bug fix: antisenseRNA shape is inferred from SBGN when antisenseRNA text is present in glyph label (#1114)
    • Bug fix: export to SBGN sometimes crashed due to concurrency issues (#1126)
    • Bug fix: CellDesigner models where start and end point of reaction was the same were not handled properly (#1131)
    • Bug fix: more than one authors in CellDesigner file were not parsed properly (#1156)
    • Bug fix: SBGN reaction with no reactants crashed map upload (#1148)
    • Bug fix: import from SBGN assigned invalid name to species that didn't have label defined (#1093)
    • Bug fix: drawing protein in SBGN-like style didn't handle properly dimension of the species for multimers bigger than 2 (#1091)
    • Bug fix: drawing of structural state in SBGN-like style uses RoundedRectangle instead of Ellipse which was not SBGN-compliant (#1095)
    • Bug fix: import from CellDesigner rounded alias dimension to integer
    • Bug fix: compartments limited by corner (left-top corner compartment, etc) are parsed properly from CellDesigner files
    • Bug fix: structural states of proteins are imported properly from SBGNML PD (#995)
    • Bug fix: export to CellDesigner names with new line is properly handled (#930)
    • Bug fix: layout of the exported reactome pathways is fixed when reactome exporter violates SBGN specification (#707)
    • Bug fix: unknown catalysis boolean gate modifiers in CellDesigner are visualized with proper line type across all included modifiers (#957)
    • Bug fix: dimension of the modifications is the same as in minerva when exporting to SBGNML-PD (#554)
    • Bug fix: position of structural state is preserved on upload CellDesigner file (#671)
    • Bug fix: problematic notes doesn't crash CellDesigner upload (#968)
  • v15.0.0-beta.5
    Release v15.0.0-beta.5
    • Backward incompatible: truncation/association/dissocation points are represented as a dot in all new images/uploaded maps (#1265)
    • Backward incompatible: export to SBML uses SBO:0000297 term for complexes (#1290)
    • Backward incompatible: export to SBML uses SBO:0000253 term for hypothetical complexes (#1290)
    • Small improvement: warning message about disabled DAPI is centered and tooltip appears almost immediately on hover (#1294)
    • Small improvement: admin configuration panel for DAPI redesigned (#1286)
    • Bug fix: links to Evidence Code Ontology did not appear (#1280)
    • Bug fix: export to GPML uses proper arrow types (#1262)
    • Bug fix: export to GPML uses dashed lines in reactions when possible (#1262)
    • Bug fix: pathways are visualized in image converter (#1266)
    • Bug fix: there is a bug in PathVisio that breaks short segments being the end of catalist therefore short segments are removed from export (#1263)
    • Bug fix: conversion of file containing BOM did not work (#1264)
    • Bug fix: dashed elements imported from GPML are treated as hypothetical (#1268)
    • Bug fix: hypothetical elements exported to GPML are drawn with dashed line (#1268)
    • Bug fix: proper color is parsed from CellDesigner species marked as 'brief' (#1268)
    • Bug fix: export to CellDesigner replace unsupported bqmodel:isDerivedFrom types with something readable by CellDesigner (#1281)
    • Bug fix: unknown elements are exported to 'Unknown' data nodes in GPML (#1274)
    • Bug fix: uploading map with elements having identifiers like "artX" could break upload (#1273)
    • Bug fix: export from minerva does not include SemanticZoom terms for text notes (#1287)
    • Bug fix: import from GPML introduces space between inhibition and process (#1270)
    • Bug fix: map containing kinetic equations exported to CellDesigner was not a valid SBML file (#1271)
    • Bug fix: search for drugs for in target element in submap did not work after uploading map (#1285, #1288)
    • Bug fix: providing chemical search parameter in url for project that did not contain disease defined raised an error (#1287)
  • v14.0.13
    Release v14.0.13
    • Bug fix: chrome modified default css and service looked ugly in chrome (#1260)
    • Bug fix: uploaded HGNC identifiers that looks like "HGNC:HGNC:1234" are changed to "HGNC:1234" (#1252)
    • Bug fix: creating comment with too long name/email resulted in Internal Server Error - now the proper error message is returned (#1245)
    • Bug fix: user cannot put too long name in a comment dialog (#1245)
    • Bug fix: when url contained invalid submap id unhandled error was raised (#1243)
  • v15.0.0-beta.4
    Release v15.0.0-beta.4
    • Backward incompatible: and/split points are represented as a dot in all new images/uploaded maps (#1253)
    • Backward incompatible: reation will be on top of elements in maps uploaded from formats that does not contain z-index (#1251)
    • Small improvement: "bqbiol:occursIn" and "bqmodel:isDerivedFrom" and handled in annotations (#1190),
    • Small improvement: 3DMET, Evidence Code Ontology, Kegg Glycan, LipidBank, Chemical Component Dictionary annotations are supported (#1190)
    • Small improvement: SWISS-model annotations are supported (#1249),
    • Small improvement: small css improvement in info tab (#1104)
    • Bug fix: upload of SBGN files didn't process unicode characters properly when server was running with encoding different than UTF-8 (#1142)
    • Bug fix: export unknown species to GPML caused pathvisio to crash (#1215)
    • Bug fix: annotations in CD 2.5 caused import to crash (#1125)
    • Bug fix: complex reaction with two required reactants in CD 2.5 caused import to crash (#1125)
    • Bug fix: kinetic equation in reaction that referenced complex (instead of target species) crashed CellDesigner upload (#1212)
    • Bug fix: transcription-translation should be turned into StateTransition reaction when importing GPML (#1236)
    • Bug fix: species graphical shape is taken as secondary indication to species type when importing GPML (#1237)
    • Bug fix: name is assigned to complexes when second complex is defined in it in GPML (#1238)
    • Bug fix: kinetic equation in SBML that used speciesReference id crashed upload (#1190)
    • Bug fix: layout reaction with duplicated reaction element crashed SBML upload (#1190)
    • Bug fix: conversion from SBML to CellDesigner escaped "<" twice (#1228)
    • Bug fix: graphical elements imported from GPML have border color and background color defined properly (#1259)
    • Bug fix: export/import to GPML properly handles degradation (#1241)
    • Bug fix: Select annotation dialog width is at least 840px (#1210)
    • Bug fix: modifiers joined by operator were exported to SBML without line corresponding to the operator (#1199)
    • Bug fix: first state variable that does not match modification residue is translated to structural state when importing from SBGNML (#1088)
    • Bug fix: list of database releases is always updated on DAPI credentials change (#1128)
    • Bug fix: proper error is returned when trying to sign up to DAPI with exisitng account (#1158)
    • Bug fix: session mixed chemical and drug queries when refreshing webpage (#1161)
    • Bug fix: caching data for map with entrez ID crashed
    • Bug fix: not all data were cached about drugs/chemicals/mirnas when "cache data" was checked on project upload
    • Bug fix: when invalid password is provided proper warning is raised (#1159)
    • Bug fix: when no release is accepted in admin panel user is notified that not all databases will be used in search queries (#1159)
    • Bug fix: when exporting to GPML line ends are aligned to new shapes (#1242)
    • Bug fix: when exporting to GPML proper shapes are used for species
    • Bug fix: export of modifications to GPML generated invalid GPML file (#1257)
    • Bug fix: caching file with protin name containing new line character crashed
    • Bug fix: when caching the data on project upload list hint list for mirna, drugs, chemicals were not cached (#1163)
  • v14.0.12
    Release v14.0.12
    • Bug fix: comments on submaps were not visible (#1230)
    • Bug fix: removing comment from submap did not work
    • Bug fix: reaction name containing "<" character was exported inproperly to CellDesigner (#1227)
    • Bug fix: doi annotation was inproperly parsed from CellDesigner file and resulted in not clickable link (#1231)
    • Bug fix: when plugin data was too big 500 error was returned (#1232)
    • Bug fix: removing plugin in admin panel removes it from server permanently (#1211)
  • v15.0.0-beta.3
    Release v15.0.0-beta.3
      * Improvement: API allows to merge files (#1208)
      * Bug fix: exported SBML was not compliant with the standard when element
        name was empty (#1147)
      * Bug fix: flybase and pato annotations from CellDesigner were not picked
        (#1113)
      * Bug fix: invalid data overlays in uploaded zip file created "valid" project
        that could not be opened (#1086)
      * Bug fix: export to GPML preserves font color of compartments (#1111)
      * Bug fix: export to GPML preserves information about hypotetical complexes
        (#1111)
      * Bug fix: export to GPML preserves complex name (#1111)
      * Bug fix: export to GPML preserves reaction color (#1111)
      * Bug fix: modification residues are exported to gpml (#1111)
      * Bug fix: information about reaction reversibility is exported to gpml
        (#1111)
      * Bug fix: cardinality in SBGN-like view is drawn in separate unit (#1157)
      * Bug fix: notes from SBML are parsed with all html tags (#1196)
      * Bug fix: converter API append conversion warnings to generated output notes
  • v15.0.0-beta.2
    Release v15.0.0-beta.2
    • Small Improvement: SBO annotation support added (#1194)
    • Small Improvement: additional annotation uri qualifiers added: hasProperty, isPropertyOf (#1193)
    • Small Improvement: default color of complexes imported from gpml changed to the one used by wikipathways (#1107)
    • Bug fix: newt use incorrect attributes when exporting render information that could not be parsed by minevra (#1127)
    • Bug fix: catalysis to protein was not parsed from SBGN file (#1116)
    • Bug fix: upload logs for SBGN parser were not translated properly to new structured log form
    • Bug fix: antisenseRNA shape is infered from SBGN when antisenseRNA text is present in glyph label (#1114)
    • Bug fix: export to SBGN sometimes crashed due to concurrency issues (#1126)
    • Bug fix: CellDesigner models where start and end point of reaction was the same were not handled properly (#1131)
    • Bug fix: exporting map to CellDesigner from GPML file created not-editable compartments (#1146)
    • Bug fix: some CellDesigner 2.5 files could not be parsed (#1125)
    • Bug fix: more than one authors in CellDesigner file were not parsed properly (#1156)
    • Bug fix: pathways imported from gpml persist fill color (#1107)
    • Bug fix: some reversible reactions in gpml were not imported as reversible (#1107)
    • Bug fix: colors of reactants/products/modifiers were not imported from gpml (#1107)
    • Bug fix: border color of species imported from gpml is preserved (#1107)
    • Bug fix: coordinates of complex name from GPML file is preserved (#1107)
    • Bug fix: element name for general shapes imported from GPML does not contain ShapeType if feasible (#1107)
    • Bug fix: z-index of rectangles and some complexes imported from GPML was not assigned properly (#1107)
    • Bug fix: new line in label text does not split he text into name and desciption (#1107)
    • Bug fix: label omim href with "www" prefix are parsed properly
    • Bug fix: modification position imported from GPML file is preserved (#1107)
    • Bug fix: SBGN reaction with no reactants crashed map upload (#1148)
  • v14.0.11
    Release v14.0.11
    • Bug fix: complex with no border was inproperly imported from CellDesigner (#1198)
    • Bug fix: export to CellDesigner deal with CellDesigner issue that does not allow complex species alias to be shorter than 2 characters (#1204)
    • Bug fix: kinetic parameters with INFINITY values could not be uploaded to minerva (#1202)
    • Bug fix: infinity value in kinetic parameter could not be parsed from CellDesigner file minerva (#1203)
    • Bug fix: author list inproperly presented author data when some fields were missing (#1201)
    • Bug fix: refreshing minerva page with more than one plugin opened might led to an error due to race condition (#1197)
  • v14.0.10
    Release v14.0.10
    • Bug fix: reaction without ports in SBGN crashed upload (#1065)
    • Bug fix: annotations using newer identifiers.org uri schema were truncated by one character (#1191)
    • Bug fix: long annotation string broke listing of annotations (#1155)
  • v15.0.0-beta.1
    Release v15.0.0-beta.1
    • Bug fix: conflict on libraries caused some features to stop working in production (like parsing text notes of species, regresion in 15.0.0~alpha.1, #1139)
  • v14.0.9
    Release v14.0.9
      * Bug fix: simultanous export to SBML of more than one file could result in
        500 Internal Server Error (#1110)
      * Bug fix: refresh data overlay did not hide data overlays that were removed
        and selected (#1097)
      * Bug fix: transparent complexes are shown with wrong color (#1103)
      * Bug fix: CellDesigner sometimes marked reduced notation reaction as
        reversible even though they were not visualized so (#1109)
      * Bug fix: when data overlay was being removed user could request to remove
        overlay second time and an error was thrown (#1121)
      * Bug fix: when data overlay name in zip uploaded zip file is not present the
        name of a file is used as overlay name (#1065)
      * Bug fix: uploading empty data overlay resulted in an error (#1123)
      * Bug fix: exporting map with glyphs crashed (#1130)
      * Bug fix: transcription factor on black&white gene are drawn in black
        (#1132)
      * Bug fix: when SBGN file contained consumption starting in process minerva
        crashed (#1063)
      * Bug fix: when SBGN file contained reaction where every node started in the
        same process port minerva crashed crashed (#1063)
      * Bug fix: activity flow reaction inside SBGN PD caused upload of map to
        crash
      * Bug fix: reaction without product in SBGN crashed upload of map
      * Bug fix: when SBGN production pointed directly to process instead of
        process port upload crashed
      * Bug fix: handle properly corrupted cached chembl drug data (#1140)
  • v15.0.0-beta.0
    Release v15.0.0-beta.0
    • Feature removal: old connection to CTD is removed and replaced with new Data-API interface that closely check license compliance
    • Feature removal: some custom fields (like transparency zoom level) are not exported to CellDesigner file (#1071)
    • Improvement: export to SBGN/SBML/GPML format provides popup with list of warnings occurred in the translation process (#713)
    • Small improvement: autocomplete for chemical searches is enabled (#841)
    • Small improvement: import/export to SBML of unit of information obtained from SBGN source is supported (#1088)
    • Small improvement: rounded rectangle is used to visualize Simple chemicals in SBGN-like view according to the newest SBGN specification (#1094)
    • Small improvement: after removing project is confirmed the system enforce waiting until remove status is confirmed (#1106)
    • Bug fix: import from SBGN assigned invalid name to species that didn't have label defined (#1093)
    • Bug fix: drawing protein in SBGN-like style didn't handle properly dimension of the species for multimers bigger than 2 (#1091)
    • Bug fix: drawing of structural state in SBGN-like style uses RoundedRectangle insetad of Ellipse which was not SBGN-compliant (#1095)
    • Bug fix: export to GPML provided invalid font size and pathviosio could not open it (#1108)
  • v14.0.8
    Release v14.0.8
    • Bug fix: API didn't allow to upload pluins with local url (#1084, regression 14.0.7)
    • Bug fix: upload of data overlay with two entries having different uniprot identifier but pointing to the same gene crashed (#1083)
    • Bug fix: don't allow to remove plugin twice (#1081)
    • Bug fix: upload of SBML file with very short reaction length could produce a map that couldn't be exported to SBML anymore (#1078)
    • Bug fix: import of structural state from SBGN-ML PD that cannot be normalized to residue is changed into structural state without losing information (#1062)
    • Bug fix: import of stimulation modifiers from SBGN-ML crashed converter (#1063)
    • Bug fix: export to SBGN files created from newt source produced corrupted disconnected reactions
    • Bug fix: upload from zip file allowed empty overlay name (#1065)
    • Bug fix: genome browser slider didn't work properly in Safari on non-default Browser zoom level (#1048)
    • Bug fix: project without background overlay but with some custom data overlays crashed with an error (#1066)
    • Bug fix: when session expires updating options in configuration panel threw unhandled error (#1068)
  • v15.0.0-alpha.2
    Release v15.0.0-alpha.2
    • Feature removal: old connection to drugBank is removed and replaced with new Data-API interface that closely check license compliance
    • Small improvement: when typing drug, list of autocomplete drugs should be available limited to the drugs targetting something on the map (#641)
    • Small improvement: data not compliant with database constraints (for instance too long species identifiers) will be automatically adjust instead of crashing project upload (#1041)
    • Small improvement: reaction lines in SBML files without layout are set outside of the species (not in the center, #1023)
    • Bug fix: import from CellDesigner rounded alias dimension to integer
    • Bug fix: old project with structural state couldn't be removed (regression 15.0.0~alpha.1, #1021)
    • Bug fix: procseing sbgn file with render information was breaking sometimes (regresion 15.0.0~alpha.1, #1020)
  • v14.0.7
    Release v14.0.7
    • Bug fix: API allowed to provide malformed plugin url that could be used for xss attack (#1073)
  • v14.0.6
    Release v14.0.6
    • Bug fix: opening map with no background overlays and search request in url provides proper error message (#1046)
    • Bug fix: search by identifier didn't consider identifiers added by annotators (#1047)
    • Bug fix: if map has SHOW OVERVIEW, the legend/comment/clear were not displayed at all (regression 14.0.5, #1045)
    • Bug fix: when there is a problem with database during removing project, project removal doesn't hang (#1058)
    • Bug fix: coloring of the reaction wasn't applied to center of reaction (regression 14.0.0, #1057)
    • Bug fix: genetic variant overlay improperly processed elements identified by miriam identifiers, like uniprot (#1059)
    • Bug fix: invalid information was provided for genetic variants overlay when map organism was defined (#1060)
  • v14.0.5
    Release v14.0.5
    • Bug fix: copy-paste of genetic-variant data overlay into Add overlay content dialog could crash upload (#1040)
    • Bug fix: some annotators (like Cazy) were crashing on old installations (#1029)
    • Bug fix: uploading a map that breaks postgres constraints hung upload of the project (#1028)
    • Bug fix: uploading of the page with low internet connection speed could produce empty screen for several seconds/minutes - now the loading icon is present (#1025)
    • Bug fix: search for NADH drug resulted in drug with empty name (#1018)
    • Bug fix: export to SBML didn't handle properly arrows (#1015)
    • Bug fix: Font colour of text area was preserved in Empty view (#1014)
    • Bug fix: exported sbml file always contain model identifier (#1013)
    • Bug fix: typo allel reverted to allele in overlay data (regression 14.0.0, #1012)
    • Bug fix: after loading/removing too many plugins it was impossible to load new plugins (#1011)
    • Bug fix: CLEAR button disappears after legend, comment checkboxes when plugin tab used to much space (#976)