From c6cf8c955765f59a3991cef684562dae0aa7b794 Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Fri, 4 Jan 2019 09:56:04 +0100
Subject: [PATCH] removing unused imports
---
.../converter/model/sbml/MultiPackageNamingUtils.java | 5 +++++
.../lcsb/mapviewer/converter/model/sbml/SbmlExporter.java | 6 ------
.../model/sbml/reaction/SbmlReactionExporter.java | 8 +++++---
3 files changed, 10 insertions(+), 9 deletions(-)
diff --git a/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/MultiPackageNamingUtils.java b/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/MultiPackageNamingUtils.java
index 3b691a55b7..7e00c47184 100644
--- a/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/MultiPackageNamingUtils.java
+++ b/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/MultiPackageNamingUtils.java
@@ -18,6 +18,11 @@ import lcsb.mapviewer.model.map.species.field.TranscriptionSite;
*
*/
public final class MultiPackageNamingUtils {
+
+ /**
+ * Default logger.
+ */
+ @SuppressWarnings("unused")
private static Logger logger = Logger.getLogger(MultiPackageNamingUtils.class);
private static final String MINERVA_MODIFICATION_TYPE_PREFIX = "minerva_modification_type_";
diff --git a/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlExporter.java b/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlExporter.java
index 3e8819a342..79d3012885 100644
--- a/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlExporter.java
+++ b/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/SbmlExporter.java
@@ -3,9 +3,7 @@ package lcsb.mapviewer.converter.model.sbml;
import java.io.UnsupportedEncodingException;
import java.util.Arrays;
import java.util.Collection;
-import java.util.HashMap;
import java.util.HashSet;
-import java.util.Map;
import java.util.Set;
import javax.xml.stream.XMLStreamException;
@@ -19,7 +17,6 @@ import org.sbml.jsbml.ext.layout.Dimensions;
import org.sbml.jsbml.ext.layout.Layout;
import org.sbml.jsbml.ext.layout.LayoutModelPlugin;
import org.sbml.jsbml.ext.multi.MultiModelPlugin;
-import org.sbml.jsbml.ext.multi.MultiSpeciesType;
import org.sbml.jsbml.ext.render.GlobalRenderInformation;
import org.sbml.jsbml.ext.render.RenderLayoutPlugin;
@@ -142,15 +139,12 @@ public class SbmlExporter {
return layout;
}
- private Map<Class<?>, MultiSpeciesType> speciesTypeByClass = new HashMap<>();
-
protected MultiModelPlugin createSbmlMultiPlugin(Model result) {
MultiModelPlugin multiPlugin = new MultiModelPlugin(result);
result.addExtension("multi", multiPlugin);
return multiPlugin;
}
-
/**
* Creates SBML render plugin for SBML model.
*
diff --git a/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/reaction/SbmlReactionExporter.java b/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/reaction/SbmlReactionExporter.java
index 257a39e6ce..1c0323f326 100644
--- a/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/reaction/SbmlReactionExporter.java
+++ b/converter-sbml/src/main/java/lcsb/mapviewer/converter/model/sbml/reaction/SbmlReactionExporter.java
@@ -17,7 +17,6 @@ import org.sbml.jsbml.Species;
import org.sbml.jsbml.SpeciesReference;
import org.sbml.jsbml.ext.layout.AbstractReferenceGlyph;
import org.sbml.jsbml.ext.layout.Curve;
-import org.sbml.jsbml.ext.layout.Layout;
import org.sbml.jsbml.ext.layout.LineSegment;
import org.sbml.jsbml.ext.layout.Point;
import org.sbml.jsbml.ext.layout.ReactionGlyph;
@@ -51,10 +50,15 @@ public class SbmlReactionExporter extends SbmlBioEntityExporter<Reaction, org.sb
/**
* Default class logger.
*/
+ @SuppressWarnings("unused")
private static Logger logger = Logger.getLogger(SbmlReactionExporter.class);
+
private SbmlBioEntityExporter<lcsb.mapviewer.model.map.species.Species, Species> speciesExporter;
+
private SbmlBioEntityExporter<Compartment, org.sbml.jsbml.Compartment> compartmentExporter;
+ private Map<ReactionNode, SimpleSpeciesReference> speciesReferenceByReactionNode = new HashMap<>();
+
public SbmlReactionExporter(Model sbmlModel, lcsb.mapviewer.model.map.model.Model minervaModel,
SbmlBioEntityExporter<lcsb.mapviewer.model.map.species.Species, Species> speciesExporter,
Collection<SbmlExtension> sbmlExtensions,
@@ -64,8 +68,6 @@ public class SbmlReactionExporter extends SbmlBioEntityExporter<Reaction, org.sb
this.compartmentExporter = compartmentExporter;
}
- Map<ReactionNode, SimpleSpeciesReference> speciesReferenceByReactionNode = new HashMap<>();
-
@Override
public org.sbml.jsbml.Reaction createSbmlElement(Reaction reaction) throws InconsistentModelException {
String reactionId = getReactionId(reaction);
--
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