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Commit 4ce0bb1f authored by Piotr Gawron's avatar Piotr Gawron
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class allowing properties changed to properly reflect object properties

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converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/annotation/NoteField.java
+ 192
− 194
View file @ 4ce0bb1f
package lcsb.mapviewer.converter.model.celldesigner.annotation; package lcsb.mapviewer.converter.model.celldesigner.annotation;
import lcsb.mapviewer.converter.model.celldesigner.structure.CellDesignerElement;
import lcsb.mapviewer.converter.model.celldesigner.structure.CellDesignerSpecies;
import lcsb.mapviewer.model.map.BioEntity; import lcsb.mapviewer.model.map.BioEntity;
import lcsb.mapviewer.model.map.Drawable; import lcsb.mapviewer.model.map.Drawable;
import lcsb.mapviewer.model.map.MiriamType; import lcsb.mapviewer.model.map.MiriamType;
...@@ -16,197 +14,197 @@ import lcsb.mapviewer.model.map.species.Species; ...@@ -16,197 +14,197 @@ import lcsb.mapviewer.model.map.species.Species;
* *
*/ */
public enum NoteField { public enum NoteField {
/** /**
* List of {@link MiriamType#HGNC} identifiers. * List of {@link MiriamType#HGNC} identifiers.
*/ */
HGNC("HGNC_ID", BioEntity.class, MiriamType.HGNC), HGNC("HGNC_ID", BioEntity.class, MiriamType.HGNC),
/** /**
* List of {@link MiriamType#REFSEQ} identifiers. * List of {@link MiriamType#REFSEQ} identifiers.
*/ */
REFSEQ("RefSeq_ID", BioEntity.class, MiriamType.REFSEQ), REFSEQ("RefSeq_ID", BioEntity.class, MiriamType.REFSEQ),
/** /**
* List of {@link MiriamType#ENTREZ} identifiers. * List of {@link MiriamType#ENTREZ} identifiers.
*/ */
ENTREZ("EntrezGene_ID", BioEntity.class, MiriamType.ENTREZ), ENTREZ("EntrezGene_ID", BioEntity.class, MiriamType.ENTREZ),
/** /**
* List of {@link MiriamType#REACTOME} identifiers. * List of {@link MiriamType#REACTOME} identifiers.
*/ */
REACTOME("Reactome_ID", BioEntity.class, MiriamType.REACTOME), REACTOME("Reactome_ID", BioEntity.class, MiriamType.REACTOME),
/** /**
* List of {@link MiriamType#PUBMED} identifiers. * List of {@link MiriamType#PUBMED} identifiers.
*/ */
PUBMED("Pubmed_ID", BioEntity.class, MiriamType.PUBMED), PUBMED("Pubmed_ID", BioEntity.class, MiriamType.PUBMED),
/** /**
* List of {@link MiriamType#KEGG_GENES} identifiers. * List of {@link MiriamType#KEGG_GENES} identifiers.
*/ */
KEGG_GENES("KEGG_ID", BioEntity.class, MiriamType.KEGG_GENES), KEGG_GENES("KEGG_ID", BioEntity.class, MiriamType.KEGG_GENES),
/** /**
* List of {@link MiriamType#PANTHER} identifiers. * List of {@link MiriamType#PANTHER} identifiers.
*/ */
PANTHER("PANTHER", BioEntity.class, MiriamType.PANTHER), PANTHER("PANTHER", BioEntity.class, MiriamType.PANTHER),
/** /**
* {@link Element#symbol}. * {@link Element#symbol}.
*/ */
SYMBOL("Symbol", CellDesignerElement.class, null), SYMBOL("Symbol", BioEntity.class, null),
/** /**
* {@link Element#fullName}. * {@link Element#fullName}.
*/ */
NAME("Name", CellDesignerElement.class, null), NAME("Name", BioEntity.class, null),
/** /**
* {@link Element#notes} or {@link Reaction#notes} . * {@link Element#notes} or {@link Reaction#notes} .
*/ */
DESCRIPTION("Description", BioEntity.class, null), DESCRIPTION("Description", BioEntity.class, null),
/** /**
* {@link Element#formerSymbols}. * {@link Element#formerSymbols}.
*/ */
PREVIOUS_SYMBOLS("Previous Symbols", CellDesignerElement.class, null), PREVIOUS_SYMBOLS("Previous Symbols", Element.class, null),
/** /**
* {@link Element#synonyms} or {@link Reaction#synonyms}. * {@link Element#synonyms} or {@link Reaction#synonyms}.
*/ */
SYNONYMS("Synonyms", BioEntity.class, null), SYNONYMS("Synonyms", BioEntity.class, null),
/** /**
* {@link Element#abbreviation} or {@link Reaction#abbreviation}. * {@link Element#abbreviation} or {@link Reaction#abbreviation}.
*/ */
ABBREVIATION("Abbreviation", BioEntity.class, null), ABBREVIATION("Abbreviation", BioEntity.class, null),
/** /**
* {@link Reaction#formula}. * {@link Reaction#formula}.
*/ */
FORMULA("Formula", Reaction.class, null), FORMULA("Formula", Reaction.class, null),
/** /**
* {@link Reaction#mechanicalConfidenceScore}. * {@link Reaction#mechanicalConfidenceScore}.
*/ */
MECHANICAL_CONFIDENCE_SCORE("MechanicalConfidenceScore", Reaction.class, null), MECHANICAL_CONFIDENCE_SCORE("MechanicalConfidenceScore", Reaction.class, null),
/** /**
* {@link Reaction#lowerBound}. * {@link Reaction#lowerBound}.
*/ */
LOWER_BOUND("LowerBound", Reaction.class, null), LOWER_BOUND("LowerBound", Reaction.class, null),
/** /**
* {@link Reaction#upperBound}. * {@link Reaction#upperBound}.
*/ */
UPPER_BOUND("UpperBound", Reaction.class, null), UPPER_BOUND("UpperBound", Reaction.class, null),
/** /**
* {@link Reaction#subsystem}. * {@link Reaction#subsystem}.
*/ */
SUBSYSTEM("Subsystem", Reaction.class, null), SUBSYSTEM("Subsystem", Reaction.class, null),
/** /**
* {@link Reaction#geneProteinReaction}. * {@link Reaction#geneProteinReaction}.
*/ */
GENE_PROTEIN_REACTION("GeneProteinReaction", Reaction.class, null), GENE_PROTEIN_REACTION("GeneProteinReaction", Reaction.class, null),
/** /**
* {@link Element#formula}. * {@link Element#formula}.
*/ */
CHARGED_FORMULA("ChargedFormula", CellDesignerElement.class, null), CHARGED_FORMULA("ChargedFormula", Element.class, null),
/** /**
* {@link Species#charge}. * {@link Species#charge}.
*/ */
CHARGE("Charge", CellDesignerSpecies.class, null), CHARGE("Charge", Species.class, null),
/** /**
* {@link Element#getSemanticZoomLevelVisibility()}. * {@link Element#getSemanticZoomLevelVisibility()}.
*/ */
SEMANTIC_ZOOM_LEVEL_VISIBILITY("SemanticZoomLevelVisibility", BioEntity.class, null), SEMANTIC_ZOOM_LEVEL_VISIBILITY("SemanticZoomLevelVisibility", BioEntity.class, null),
/** /**
* {@link Element#getSemanticZoomLevelVisibility()}. * {@link Element#getSemanticZoomLevelVisibility()}.
*/ */
TRANSPARENCY_ZOOM_LEVEL_VISIBILITY("SemanticZoomLevelTransparency", Element.class, null), TRANSPARENCY_ZOOM_LEVEL_VISIBILITY("SemanticZoomLevelTransparency", Element.class, null),
/** /**
* {@link Element#getSemanticZoomLevelVisibility()}. * {@link Element#getSemanticZoomLevelVisibility()}.
*/ */
@Deprecated @Deprecated
TRANSPARENCY_ZOOM_LEVEL_VISIBILITY_OLD("TransparencyZoomLevelVisibility", Element.class, null), TRANSPARENCY_ZOOM_LEVEL_VISIBILITY_OLD("TransparencyZoomLevelVisibility", Element.class, null),
@ImportOnly @ImportOnly
Z_INDEX("Z-Index", Drawable.class, null), Z_INDEX("Z-Index", Drawable.class, null),
; ;
/** /**
* Name used in the notes to distinguish fields. * Name used in the notes to distinguish fields.
*/ */
private String commonName; private String commonName;
/** /**
* What object class can have this field. * What object class can have this field.
*/ */
private Class<?> clazz; private Class<? extends Drawable> clazz;
/** /**
* What {@link MiriamType} is associated with the field. * What {@link MiriamType} is associated with the field.
*/ */
private MiriamType miriamType; private MiriamType miriamType;
/** /**
* Default constructor. * Default constructor.
* *
* @param name * @param name
* {@link #commonName} * {@link #commonName}
* @param clazz * @param clazz
* {@link #clazz} * {@link #clazz}
*/ */
NoteField(String name, Class<?> clazz) { NoteField(String name, Class<? extends Drawable> clazz) {
this.commonName = name; this.commonName = name;
this.clazz = clazz; this.clazz = clazz;
} }
/** /**
* Default constructor. * Default constructor.
* *
* @param name * @param name
* {@link #commonName} * {@link #commonName}
* @param clazz * @param clazz
* {@link #clazz} * {@link #clazz}
* @param type * @param type
* {@link #miriamType} * {@link #miriamType}
*/ */
NoteField(String name, Class<?> clazz, MiriamType type) { NoteField(String name, Class<? extends Drawable> clazz, MiriamType type) {
this(name, clazz); this(name, clazz);
this.miriamType = type; this.miriamType = type;
} }
/** /**
* @return the miriamType * @return the miriamType
* @see #miriamType * @see #miriamType
*/ */
public MiriamType getMiriamType() { public MiriamType getMiriamType() {
return miriamType; return miriamType;
} }
/** /**
* @return the commonName * @return the commonName
* @see #commonName * @see #commonName
*/ */
public String getCommonName() { public String getCommonName() {
return commonName; return commonName;
} }
/** /**
* @return the clazz * @return the clazz
* @see #clazz * @see #clazz
*/ */
public Class<?> getClazz() { public Class<?> getClazz() {
return clazz; return clazz;
} }
} }
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