Closed
Milestone
started on Jun 1, 2020
Paper review - Microbiome - 1
Unstarted Issues (open and unassigned)
0
Ongoing Issues (open and assigned)
0
Completed Issues (closed)
17
- Replace SeqKit
- Output format
- More cores used than specified
- Dependency gcc/g++
- Reduce output size
- DeepARG - parameters in config file
- Add RGI (AMR prediction)
- Documentation
- PlasFlow minimal contig length from config
- Error if no VirSorter results in AMR_MGE.R
- size_fasta is not used by seqkit
- PlasFlow threshold from config
- README.md update
- Update SignalP
- Replace SignalP
- Snakemake rule messages
- DeepARG -- git lsf issue
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