Reduce output size
Remove all intermediate files which are not relevant to the user.
Files with relevant results should be compressed, e.g. output created by
Check if there are very large log files.
make not relevant intermediate files temporary w/
hmmers stdout to
/dev/nullinstead of the log file
- compress relevant intermediate files
- add rule to removes files which cannot be made temp() (files used in snakemake checkpoints)