Reduce output size
Remove all intermediate files which are not relevant to the user.
Files with relevant results should be compressed, e.g. output created by PlasFlow
.
Check if there are very large log files.
-
make not relevant intermediate files temporary w/ temp(...)
-
redirect hmmer
s stdout to/dev/null
instead of the log file -
compress relevant intermediate files -
add rule to removes files which cannot be made temp() (files used in snakemake checkpoints)