Commit 6a383de0 authored by Laura Denies's avatar Laura Denies
Browse files

Update README.md

parent f4d6f62d
......@@ -12,7 +12,7 @@ For further information regarding usage and generated reports, please see the [D
The main requirements are:
- `gcc/g++`
- `git` and `git lfs`
- `conda`
- `conda (version 4.9.2)`
Most other dependencies are either included as a `git submodule` or will be installed automatically by `snakemake` using the `conda` YAML files in `envs/`.
However, some tools need to be installed and/or configured manually.
......@@ -22,9 +22,9 @@ However, some tools need to be installed and/or configured manually.
```bash
# install miniconda3
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod u+x Miniconda3-latest-Linux-x86_64.sh
./Miniconda3-latest-Linux-x86_64.sh # follow the instructions
wget https://repo.anaconda.com/miniconda/Miniconda3-py37_4.9.2-Linux-x86_64.sh
chmod u+x Miniconda3-py37_4.9.2-Linux-x86_64.sh
./Miniconda3-py37_4.9.2-Linux-x86_64.sh # follow the instructions
```
## PathoFact
......@@ -138,4 +138,4 @@ Include the required path to the SingalP v5.0 installation to the config file `t
conda activate PathoFact
# run the pipeline
snakemake -s test/Snakefile --use-conda --reason --cores 1 -p
```
\ No newline at end of file
```
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