diff --git a/README.md b/README.md index e44cc585c40ae7d12a57e8de3e95fc051e0ebabb..e6f4348be7447515b0adf3448418aa1199200bfb 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,7 @@ For further information regarding usage and generated reports, please see the [D The main requirements are: - `gcc/g++` - `git` and `git lfs` -- `conda` +- `conda (version 4.9.2)` Most other dependencies are either included as a `git submodule` or will be installed automatically by `snakemake` using the `conda` YAML files in `envs/`. However, some tools need to be installed and/or configured manually. @@ -22,9 +22,9 @@ However, some tools need to be installed and/or configured manually. ```bash # install miniconda3 -wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -chmod u+x Miniconda3-latest-Linux-x86_64.sh -./Miniconda3-latest-Linux-x86_64.sh # follow the instructions +wget https://repo.anaconda.com/miniconda/Miniconda3-py37_4.9.2-Linux-x86_64.sh +chmod u+x Miniconda3-py37_4.9.2-Linux-x86_64.sh +./Miniconda3-py37_4.9.2-Linux-x86_64.sh # follow the instructions ``` ## PathoFact @@ -138,4 +138,4 @@ Include the required path to the SingalP v5.0 installation to the config file `t conda activate PathoFact # run the pipeline snakemake -s test/Snakefile --use-conda --reason --cores 1 -p -``` \ No newline at end of file +```