Computational models of different aspects of COVID-19
Integrated meta-omics pipeline
STAR and DESeq2
An R package for generating chemical stripes from patent or literature data extracted from PubChem
Additional analyses for IMP manuscript
Template repository for writing a paper the R3 way.
Code used for the analysis of the RNA-seq, ATAC-seq and ChIP-seq datasets produced in this study. Original fastq files deposited in https://ega-archive.org/, under the accession number EGAD00001009288.
LAO time series analyses
Pre-screening mass spectrometry data.
seesaw_code project, see details in:
GigaSOM.jl: Huge-scale, high-performance flow cytometry clustering in Julia.
ShinyTPs: Curate transformation products from text mining results from HSDB & PubChem
A repository for the non-target analysis of Luxembourg surface water samples led by Dagny Aurich
Mouse microglia regional heterogeneity in single cell resolution
R code for an interface to MINERVA API and helper functions
Repository for all slides related to R3 courses.
Repository for scripts used in the analyses for the publication "Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance"