Explore projects

Computational models of different aspects of COVID-19

Integrated meta-omics pipeline

An R package for generating chemical stripes from patent or literature data extracted from PubChem

Additional analyses for IMP manuscript

LAO time series analyses

A project for interactions with PubChem

seesaw_code project, see details in:

Repository for scripts used in the analyses for the publication "Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance"

ShinyTPs: Curate transformation products from text mining results from HSDB & PubChem

Code used for the analysis of the RNA-seq, ATAC-seq and ChIP-seq datasets produced in this study. Original fastq files deposited in https://ega-archive.org/, under the accession number EGAD00001009288.

Repository for NORMAN-SLE work organization at ECI, including list tracking, updates and documentation. Main representatives: Emma and Hiba.

This repository contains the code for statistical analyses performed in Chapter 3 of my thesis "Cross-sectional and longitudinal profiling of PD transcriptomics and metabolomics". The project consists on whole blood transcriptomics and blood plasma metabolomics cross-sectional and longitudinal profiling of Parkinson's disease patients and controls from the PPMI cohort and the LuxPARK cohort respectively, to identify differential molecular and higher-level functional features in PD.

This repository contains the code for ML analyses performed in Chapter 4 of my PhD thesis "Interpretable Machine Learning on omics data for biomarker discovery in Parkinson's disease". The project consists on performing Parkinson's disease (PD) case-control classification from blood plasma metabolomics measurements at the baseline clinical visit from the LuxPARK cohort, and from whole blood transcriptomics data at baseline as well as dynamic features engineered from a short temporal series of 4 timepoints from the PPMI cohort. The study involves evaluation of different feature selection strategies, The goal was to build and test a collection of ML models and, most interestingly, identify molecular and higher-level functional representations associated with PD diagnosis.

This is a mirror from https://github.com/BarlierC/RNetDys.

This repository contains the scripts that have been developed in the course of the GeneDER project (Biomedical Data Science group - Enrico Glaab Lab).