refactoring: spectral table is the summary table

R/api.R

@@ -343,7 +343,7 @@ prescreen <- function(m) {
 
 ##' @export
 sort_spectra <- function(m) {
-    ## Sorts the spectral table (summ) in order specified either in
+    ## Sorts the summary table (summ) in order specified either in
     ## `order spectra` sublist of m$conf, or if that is null, the
     ## DEF_ORDER_SPECTRA.
     order <- if (!is.null(m$conf[["order spectra"]])) m$conf[["order spectra"]] else DEF_ORDER_SPECTRA

R/resources.R

@@ -185,5 +185,5 @@ QA_COLS <- c(QA_FLAGS,QA_NUM_REAL,QA_NUM_INT)
 
 SPEC_DATA_COLS <- c("eicMS1")
 
-## Default order of spectra in spectral table
+## Default order of spectra in summary table
 DEF_ORDER_SPECTRA <- c("set","qa_pass","ms1_int","adduct","mz","tag")