From 1f95bc3457db89a06cd0091fa6df2f58df5442f2 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Todor=20Kondi=C4=87?= <todor.kondic@uni.lu>
Date: Wed, 7 Oct 2020 11:59:43 +0200
Subject: [PATCH] refactoring: spectral table is the summary table
---
R/api.R | 2 +-
R/resources.R | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/R/api.R b/R/api.R
index 5ea23c0..2fd73aa 100644
--- a/R/api.R
+++ b/R/api.R
@@ -343,7 +343,7 @@ prescreen <- function(m) {
##' @export
sort_spectra <- function(m) {
- ## Sorts the spectral table (summ) in order specified either in
+ ## Sorts the summary table (summ) in order specified either in
## `order spectra` sublist of m$conf, or if that is null, the
## DEF_ORDER_SPECTRA.
order <- if (!is.null(m$conf[["order spectra"]])) m$conf[["order spectra"]] else DEF_ORDER_SPECTRA
diff --git a/R/resources.R b/R/resources.R
index d6ac4af..0ddccde 100644
--- a/R/resources.R
+++ b/R/resources.R
@@ -185,5 +185,5 @@ QA_COLS <- c(QA_FLAGS,QA_NUM_REAL,QA_NUM_INT)
SPEC_DATA_COLS <- c("eicMS1")
-## Default order of spectra in spectral table
+## Default order of spectra in summary table
DEF_ORDER_SPECTRA <- c("set","qa_pass","ms1_int","adduct","mz","tag")
--
GitLab