README.org

The Shinyscreen Package

Usage

Prescreening

1. Generate prescreening data frames,

   presc.do(list.files(path="~/ECI_SCRATCH/20190627_HEROBER",patt=".*.mzML",full.names=T),
            mode="pH",fn_cmpd_l="./cutlist.csv",proc=F,dest=".")
       

   This is to be carried out inside the directory containing the mzML files. For sequential execution, leave out the proc argument.

2. Plot,

   require(rmbmix)
   presc.plot(list.files(".",patt="2.*POS",include.dirs=T),mode="pH",cex=0.7,rt_digits=2,m_digits=4,pal="Dark2",out="prescreen.pdf")
       

   The only argument is a sequence of absolute paths to directories containing the prescreen data. The resulting plot file is going to be placed into the current working directory.