#+TITLE: The Shinyscreen Package


* Usage
** Prescreening
   1. Generate prescreening data frames,
      #+BEGIN_SRC R
      presc.do(list.files(path="~/ECI_SCRATCH/20190627_HEROBER",patt=".*.mzML",full.names=T),
               mode="pH",fn_cmpd_l="./cutlist.csv",proc=F,dest=".")
      #+END_SRC
      This is to be carried out inside the directory containing the
      ~mzML~ files. For sequential execution, leave out the ~proc~
      argument.
   2. Plot,
      #+BEGIN_SRC R
      require(rmbmix)
      presc.plot(list.files(".",patt="2.*POS",include.dirs=T),mode="pH",cex=0.7,rt_digits=2,m_digits=4,pal="Dark2",out="prescreen.pdf")
      #+END_SRC
      The only argument is a sequence of absolute paths to directories
      containing the prescreen data. The resulting plot file is going
      to be placed into the current working directory.