Commits · fd7becfcdfd54bbf6f0c15461e8b525b10cec4f7 · R3 / legacy / bedtools2

Apr 22, 2014
- support for operators 'X' and '=' in method BlockedIntervals.cpp/GetBamBlocks · fd7becfc
  lindenb authored 10 years ago
  
  fd7becfc
Apr 17, 2014
- allow command line includes for make · 57ce8d4e
  arq5x authored 10 years ago
  
  57ce8d4e
- cleanup unit tests. · 17ec9aa9
  arq5x authored 10 years ago
  
  17ec9aa9
- cleanup KeyListOps help formatting · c5d1e72d
  arq5x authored 10 years ago
  
  c5d1e72d
- add missing help menu items (-S -header) to merge · 4fd41ae5
  arq5x authored 10 years ago
  
  4fd41ae5
- allow merge -d to have negative values for minimum overlap. · d0fe42c2
  arq5x authored 10 years ago
  
  d0fe42c2
- Merge pull request #53 from nkindlon/master · fccfbfbd
  Aaron Quinlan authored 10 years ago
  
  Merge converted to PFM, first check-in
  fccfbfbd
- Merge branch 'merge' · 3b04625a
  nkindlon authored 10 years ago
  
  3b04625a
- Final unit tests for merge, including stranded merge bug fixes. · 1b866b6e
  nkindlon authored 10 years ago
  
  1b866b6e
Apr 16, 2014
- Merge branch 'merge' · 9eb4337c
  nkindlon authored 10 years ago
  
  9eb4337c
- Unit tests and bug fixes for merge release · 5eb3b68c
  nkindlon authored 10 years ago
  
  5eb3b68c
Apr 15, 2014
- Fixed merge conflicts · 8284c923
  nkindlon authored 10 years ago
  
  8284c923
- Merge branch 'master' of https://github.com/nkindlon/bedtools2 · 8b6ed4be
  nkindlon authored 10 years ago
  
  8b6ed4be
- Merge remote-tracking branch 'upstream/master' into merge · eb2f6143
  nkindlon authored 10 years ago
  
  eb2f6143
- Handling empty files with headers · fe5ea0ed
  nkindlon authored 10 years ago
  
  fe5ea0ed
Apr 09, 2014
- [TST] run shuffle tests. · bcbd75b7
  arq5x authored 10 years ago
  
  bcbd75b7
- [ENH] all shuffle with -incl to follow data distribution · 4642a149
  arq5x authored 10 years ago
  
  4642a149
Apr 08, 2014
- Merge converted to PFM, first check-in · f36d6db4
  nkindlon authored 10 years ago
  
  f36d6db4
Apr 05, 2014
- fix most filetype issues. intersect still raises error with empty files. · ed71c8e0
  arq5x authored 10 years ago
  
  ed71c8e0
Mar 25, 2014
- remove extraneous header tab · 377f1b11
  arq5x authored 11 years ago
  
  377f1b11
Mar 21, 2014
- tweak README · 9e50ca3e
  arq5x authored 11 years ago
  
  9e50ca3e
- [DOC] add new usage examples from the wild · e7f41f5e
  arq5x authored 11 years ago
  
  e7f41f5e
- [DOC] add new usage examples from the wild · 7c29e823
  arq5x authored 11 years ago
  
  7c29e823
- Merge pull request #48 from Debian/suggestion-for-testsuite · 67a81acd
  Aaron Quinlan authored 11 years ago
  
  Patches to make the testsuite easier to move.
  67a81acd
- Access data via a DATA variable, allowing to override the location. · b9c717e3
  Charles Plessy authored 11 years ago
  
  b9c717e3
- Call bedtools via the BT variable, allowing to override the location. · c1fb7ab9
  Charles Plessy authored 11 years ago
  
  c1fb7ab9
Mar 20, 2014
- just peak at first bit in isGzipFile() fix for issue46 · 6fbc3c26
  arq5x authored 11 years ago
  
  6fbc3c26
Mar 19, 2014
- Merge pull request #47 from nkindlon/master · dc51d7db
  Aaron Quinlan authored 11 years ago
  
  Fixed slop bug when slop factor exceeds MAX signed int.
  dc51d7db
Mar 18, 2014
- Fixed slop bug when slop factor exceeds MAX signed int. · 80820201
  nkindlon authored 11 years ago
  
  80820201
Mar 06, 2014
- Setting Release-Version v2.19.1 · a3fefa28
  arq5x authored 11 years ago
  
  v2.19.1
  
  a3fefa28
- Setting Release-Version v2.19.1 · 732f6830
  arq5x authored 11 years ago
  
  732f6830
- Setting Release-Version v2.19.1 · 37190385
  arq5x authored 11 years ago
  
  37190385
- [DOC] multiple ops/cols allowed in a single map run. also, speed comparo. · 50324380
  arq5x authored 11 years ago
  
  50324380
- Merge pull request #43 from nkindlon/master · 733c84b9
  Aaron Quinlan authored 11 years ago
  
  Fixed intersect bug so that bed query with Bam DB correctly gives bed ou...
  733c84b9
Mar 04, 2014
- Fixed intersect bug so that bed query with Bam DB correctly gives bed output. Added unit test. · 95098092
  nkindlon authored 11 years ago
  
  95098092
Mar 01, 2014
- Merge pull request #40 from theoryno3/master · 8be65396
  Aaron Quinlan authored 11 years ago
  
  added: mm10 mouse genome
  8be65396
- Merge pull request #41 from nkindlon/master · 1a0737df
  Aaron Quinlan authored 11 years ago
  
  Refactored KeyListOps, Context, mapFile to make KeyListOps reusable by other tools
  1a0737df
Feb 28, 2014
- More unit tests, also fixed files messed up by previous merge attempt. · af1113e7
  nkindlon authored 11 years ago
  
  af1113e7
- forgot main Makefile update. · 8bba8822
  nkindlon authored 11 years ago
  
  8bba8822
- Refactored KeyListOps, Context, mapFile for KeyListOps re-usability by other tools. · 2268ee4f
  nkindlon authored 11 years ago
  
  2268ee4f