Commits · ec052061c72430945a4b49614416d4416384cd82 · R3 / legacy / bedtools2

Feb 09, 2014
- Setting Release-Version v2.19.0 · ec052061
  arq5x authored 11 years ago
  
  ec052061
- add intersphinx support thanks to @jayhesselberth · 9235f898
  arq5x authored 11 years ago
  
  9235f898
- update sidebar · ec72cd31
  arq5x authored 11 years ago
  
  ec72cd31
- update map docs · ee0c7d82
  arq5x authored 11 years ago
  
  ee0c7d82
- Merge pull request #35 from jayhesselberth/intersphinx · eb9c9368
  Aaron Quinlan authored 11 years ago
  
  Intersphinx
  eb9c9368
Feb 08, 2014
- * fix spelling · c038f04e
  jayhesselberth authored 11 years ago
  
  c038f04e
- * modified rst to add labels for inclusion in objects.inv & intersphinx · 2428d35a
  jayhesselberth authored 11 years ago
  
  * capability
  2428d35a
Feb 06, 2014
- Merge pull request #33 from nkindlon/master · b5e50708
  Aaron Quinlan authored 11 years ago
  
  Refactored contexts for validation, added unit tests, enabled -plit for ...
  b5e50708
- Merge pull request #32 from timflutre/master · 25d24e78
  Aaron Quinlan authored 11 years ago
  
  typo on option -useFullHeader
  25d24e78
- Added -split option to map help. · 85df2b4a
  nkindlon authored 11 years ago
  
  85df2b4a
- Added unit test to intersect for gff files. · bf296c8c
  nkindlon authored 11 years ago
  
  bf296c8c
- Removed unnecessary NULL checks on delete. · d0fb3059
  nkindlon authored 11 years ago
  
  d0fb3059
- Removed outdated comment · 14caf06b
  nkindlon authored 11 years ago
  
  14caf06b
- Fixed a cut/paste error in unit test comment. · d92fdfdb
  nkindlon authored 11 years ago
  
  d92fdfdb
- Refactored contexts for validation, added unit tests, enabled -plit for map. · b912d88c
  nkindlon authored 11 years ago
  
  b912d88c
Feb 03, 2014
- add -valueOnly option to jaccard · 952088e8
  arq5x authored 11 years ago
  
  952088e8
- typo on option -useFullHeader · 369bc723
  Timothée Flutre authored 11 years ago
  
  369bc723
Feb 02, 2014
- typo. · 86346f36
  arq5x authored 11 years ago
  
  86346f36
- tweaks · dea9431b
  arq5x authored 11 years ago
  
  dea9431b
- tweaks · 408d6700
  arq5x authored 11 years ago
  
  408d6700
- add speed comparo to README · 62648f3a
  arq5x authored 11 years ago
  
  62648f3a
- [DOC] add speed comparo to docs · d9b562e8
  arq5x authored 11 years ago
  
  d9b562e8
- fix bug in merge output and cleanup jaccard test · 526119e7
  arq5x authored 11 years ago
  
  526119e7
- [ENH] correct Jaccard output header · b77e0ebb
  arq5x authored 11 years ago
  
  b77e0ebb
- [ENH] add test when -fullHeader not provided · 4bbe86d3
  arq5x authored 11 years ago
  
  4bbe86d3
- [TST] add tests for map · 35619c1d
  arq5x authored 11 years ago
  
  35619c1d
- fix conflict. · ce50a83e
  arq5x authored 11 years ago
  
  ce50a83e
- fix conflict. · 61a63f95
  arq5x authored 11 years ago
  
  61a63f95
Feb 01, 2014
- fix conflict · 1c95d72d
  arq5x authored 11 years ago
  
  1c95d72d
- Merge pull request #31 from timflutre/master · 9b4c7206
  Aaron Quinlan authored 11 years ago
  
  Allow to read whole sequence names in FASTA files
  9b4c7206
- Merge pull request #25 from nkindlon/master · f05d2f61
  Aaron Quinlan authored 11 years ago
  
  split bug fix w/ unit test
  f05d2f61
- reduce QuickString DEFAULT_CAPACITY to 8 instead of 256 to save memory. · 87f72e54
  arq5x authored 11 years ago
  
  87f72e54
- add a Context for Map tool. · ebf9a72c
  arq5x authored 11 years ago
  
  ebf9a72c
- add methods to extract column from record by its col. number (2) · a45f98c0
  arq5x authored 11 years ago
  
  a45f98c0
- add methods to extract column from record by its col. number · 61b7a976
  arq5x authored 11 years ago
  
  61b7a976
- allow RecordOutputMgr to print a record followed by arbitray string · c380cf59
  arq5x authored 11 years ago
  
  c380cf59
- add nullValue and ColOp to ContextBase for Map · 8489f019
  arq5x authored 11 years ago
  
  8489f019
- map uses PFM. · 823bfa7f
  arq5x authored 11 years ago
  
  823bfa7f
- add option -fullHeader for fasta files · accf0a13
  Timothee Flutre authored 11 years ago
  
  accf0a13
- add files to test getfasta with full header · d5ecb195
  Timothee Flutre authored 11 years ago
  
  d5ecb195