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Commit 85df2b4a authored by nkindlon's avatar nkindlon
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Added -split option to map help.

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...@@ -215,6 +215,8 @@ void map_help(void) { ...@@ -215,6 +215,8 @@ void map_help(void) {
cerr << "\t\tthat overlap A on the _opposite_ strand." << endl; cerr << "\t\tthat overlap A on the _opposite_ strand." << endl;
cerr << "\t\t- By default, overlaps are reported without respect to strand." << endl << endl; cerr << "\t\t- By default, overlaps are reported without respect to strand." << endl << endl;
cerr << "\t-split\t" << "Treat \"split\" BAM or BED12 entries as distinct BED intervals." << endl << endl;
cerr << "\t-g\t" << "Provide a genome file to enforce consistent chromosome sort order" << endl; cerr << "\t-g\t" << "Provide a genome file to enforce consistent chromosome sort order" << endl;
cerr <<"\t\tacross input files." << endl << endl; cerr <<"\t\tacross input files." << endl << endl;
......
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