Commits · d0fb30593354c8323a5f0210ce04186697df59d3 · R3 / legacy / bedtools2 · GitLab

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Feb 06, 2014
- Removed unnecessary NULL checks on delete. · d0fb3059
  nkindlon authored 11 years ago
  
  d0fb3059
- Refactored contexts for validation, added unit tests, enabled -plit for map. · b912d88c
  nkindlon authored 11 years ago
  
  b912d88c
Jan 31, 2014
- Corrections and unit tests for split bug. · 88ba7f18
  nkindlon authored 11 years ago
  
  88ba7f18
Jan 08, 2014
- Refactored Context class into Base and Derived classes for cleaner future development. · 434901e5
  nkindlon authored 11 years ago
  
  434901e5
Dec 16, 2013
- ifdef'd out DualQueue and removed usages of it to fix compiler errors with clang on Mac OS X · a12d9422
  nkindlon authored 11 years ago
  
  a12d9422
Oct 28, 2013
- Added support for Bgzip from files and stdin. · fb901324
  nkindlon authored 11 years ago
  
  fb901324
Oct 09, 2013
- Moved short circuit for BAM unmapped reads to Record::sameChromIntersect for... · 8fe692c5
  nkindlon authored 11 years ago
  
  Moved short circuit for BAM unmapped reads to Record::sameChromIntersect for when query record isn't BAM but DB record is.
  8fe692c5
Oct 04, 2013
- added BamRecord::printUnmapped method for noHit and count functionality. · 5795975f
  nkindlon authored 11 years ago
  
  5795975f
Sep 29, 2013
- Fixed unmapped mate bug · 79daf360
  nkindlon authored 11 years ago
  
  79daf360
Sep 27, 2013
- Fixed chromId bug, removed debug metric from RecordOutputMgr · 6d3c94d1
  nkindlon authored 11 years ago
  
  6d3c94d1
Sep 24, 2013
- handling for unmapped Bam records · 60223993
  nkindlon authored 11 years ago
  
  60223993
Sep 19, 2013
- fixed negative coords, zero len intervals, Bed4 format error · ca4265ec
  nkindlon authored 11 years ago
  
  ca4265ec
Sep 13, 2013
- resolved chromId problem when doing Chromsweep with BAM file sorted differently than genome file. · 36fdad10
  nkindlon authored 11 years ago
  
  36fdad10
Sep 12, 2013
- -g (genomeFile) option now gives error if file is differently sorted than genome file. · 052c0638
  nkindlon authored 11 years ago
  
  052c0638
Sep 10, 2013
- added other util directories · 1435a95a
  nkindlon authored 11 years ago
  
  1435a95a