src/utils/BinTree/BinTree.cpp

src/utils/BinTree/BinTree.h

src/utils/BinTree/Makefile

src/utils/Contexts/Context.cpp

src/utils/Contexts/Context.h

src/utils/Contexts/Makefile

src/utils/FileRecordTools/FileReaders/BamFileReader.cpp

src/utils/FileRecordTools/FileReaders/BamFileReader.h

src/utils/FileRecordTools/FileReaders/BufferedStreamMgr.cpp

src/utils/FileRecordTools/FileReaders/BufferedStreamMgr.h

src/utils/FileRecordTools/FileReaders/FileReader.cpp

src/utils/FileRecordTools/FileReaders/FileReader.h

src/utils/FileRecordTools/FileReaders/InputStreamMgr.cpp

src/utils/FileRecordTools/FileReaders/InputStreamMgr.h

src/utils/FileRecordTools/FileReaders/Makefile

...RecordTools/FileReaders/SingleLineDelimTextFileReader.cpp

...leRecordTools/FileReaders/SingleLineDelimTextFileReader.h

...RecordTools/FileReaders/SingleLineDelimTransferBuffer.cpp

...leRecordTools/FileReaders/SingleLineDelimTransferBuffer.h

src/utils/FileRecordTools/FileRecordMgr.cpp