resolved chromId problem when doing Chromsweep with BAM file sorted differently than genome file. (36fdad10) · Commits · R3 / legacy / bedtools2 · GitLab

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36fdad10

Commit 36fdad10 authored 11 years ago by nkindlon

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resolved chromId problem when doing Chromsweep with BAM file sorted differently than genome file.

parent 052c0638

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src/nekSandbox1/nekSandboxMain.cpp 40 additions, 0 deletions

src/nekSandbox1/nekSandboxMain.cpp
src/utils/FileRecordTools/FileReaders/BamFileReader.cpp 1 addition, 1 deletion

src/utils/FileRecordTools/FileReaders/BamFileReader.cpp
src/utils/FileRecordTools/FileReaders/BamFileReader.h 1 addition, 1 deletion

src/utils/FileRecordTools/FileReaders/BamFileReader.h
src/utils/FileRecordTools/FileReaders/SingleLineDelimTextFileReader.cpp 0 additions, 4 deletions

...RecordTools/FileReaders/SingleLineDelimTextFileReader.cpp
src/utils/FileRecordTools/FileRecordMgr.cpp 14 additions, 2 deletions

src/utils/FileRecordTools/FileRecordMgr.cpp
src/utils/FileRecordTools/FileRecordMgr.h 2 additions, 1 deletion

src/utils/FileRecordTools/FileRecordMgr.h
src/utils/FileRecordTools/Records/BamRecord.cpp 3 additions, 2 deletions

src/utils/FileRecordTools/Records/BamRecord.cpp
src/utils/FileRecordTools/Records/BamRecord.h 3 additions, 0 deletions

src/utils/FileRecordTools/Records/BamRecord.h
src/utils/FileRecordTools/Records/Bed3Interval.cpp 0 additions, 1 deletion

src/utils/FileRecordTools/Records/Bed3Interval.cpp
src/utils/FileRecordTools/Records/GffRecord.cpp 0 additions, 1 deletion

src/utils/FileRecordTools/Records/GffRecord.cpp

with 64 additions and 13 deletions

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