Commits · 9509809235906e0924a60a9c38abd39075547d1e · R3 / legacy / bedtools2

Mar 04, 2014
- Fixed intersect bug so that bed query with Bam DB correctly gives bed output. Added unit test. · 95098092
  nkindlon authored 11 years ago
  
  95098092
Feb 28, 2014
- More unit tests, also fixed files messed up by previous merge attempt. · af1113e7
  nkindlon authored 11 years ago
  
  af1113e7
- forgot main Makefile update. · 8bba8822
  nkindlon authored 11 years ago
  
  8bba8822
- Refactored KeyListOps, Context, mapFile for KeyListOps re-usability by other tools. · 2268ee4f
  nkindlon authored 11 years ago
  
  2268ee4f
Feb 19, 2014
- Created new KeyListOps class to replace vectorOps. Converted map tool to this. · 77c1bdad
  nkindlon authored 11 years ago
  
  77c1bdad
Feb 06, 2014
- Added -split option to map help. · 85df2b4a
  nkindlon authored 11 years ago
  
  85df2b4a
- Added unit test to intersect for gff files. · bf296c8c
  nkindlon authored 11 years ago
  
  bf296c8c
- Removed unnecessary NULL checks on delete. · d0fb3059
  nkindlon authored 11 years ago
  
  d0fb3059
- Removed outdated comment · 14caf06b
  nkindlon authored 11 years ago
  
  14caf06b
- Fixed a cut/paste error in unit test comment. · d92fdfdb
  nkindlon authored 11 years ago
  
  d92fdfdb
- Refactored contexts for validation, added unit tests, enabled -plit for map. · b912d88c
  nkindlon authored 11 years ago
  
  b912d88c
Feb 02, 2014
- typo. · 86346f36
  arq5x authored 11 years ago
  
  86346f36
- tweaks · dea9431b
  arq5x authored 11 years ago
  
  dea9431b
- tweaks · 408d6700
  arq5x authored 11 years ago
  
  408d6700
- add speed comparo to README · 62648f3a
  arq5x authored 11 years ago
  
  62648f3a
- [DOC] add speed comparo to docs · d9b562e8
  arq5x authored 11 years ago
  
  d9b562e8
- fix bug in merge output and cleanup jaccard test · 526119e7
  arq5x authored 11 years ago
  
  526119e7
- [ENH] correct Jaccard output header · b77e0ebb
  arq5x authored 11 years ago
  
  b77e0ebb
- [ENH] add test when -fullHeader not provided · 4bbe86d3
  arq5x authored 11 years ago
  
  4bbe86d3
- [TST] add tests for map · 35619c1d
  arq5x authored 11 years ago
  
  35619c1d
- fix conflict. · ce50a83e
  arq5x authored 11 years ago
  
  ce50a83e
- fix conflict. · 61a63f95
  arq5x authored 11 years ago
  
  61a63f95
Feb 01, 2014
- fix conflict · 1c95d72d
  arq5x authored 11 years ago
  
  1c95d72d
- Merge pull request #31 from timflutre/master · 9b4c7206
  Aaron Quinlan authored 11 years ago
  
  Allow to read whole sequence names in FASTA files
  9b4c7206
- Merge pull request #25 from nkindlon/master · f05d2f61
  Aaron Quinlan authored 11 years ago
  
  split bug fix w/ unit test
  f05d2f61
- reduce QuickString DEFAULT_CAPACITY to 8 instead of 256 to save memory. · 87f72e54
  arq5x authored 11 years ago
  
  87f72e54
- add a Context for Map tool. · ebf9a72c
  arq5x authored 11 years ago
  
  ebf9a72c
- add methods to extract column from record by its col. number (2) · a45f98c0
  arq5x authored 11 years ago
  
  a45f98c0
- add methods to extract column from record by its col. number · 61b7a976
  arq5x authored 11 years ago
  
  61b7a976
- allow RecordOutputMgr to print a record followed by arbitray string · c380cf59
  arq5x authored 11 years ago
  
  c380cf59
- add nullValue and ColOp to ContextBase for Map · 8489f019
  arq5x authored 11 years ago
  
  8489f019
- map uses PFM. · 823bfa7f
  arq5x authored 11 years ago
  
  823bfa7f
- add option -fullHeader for fasta files · accf0a13
  Timothee Flutre authored 11 years ago
  
  accf0a13
- add files to test getfasta with full header · d5ecb195
  Timothee Flutre authored 11 years ago
  
  d5ecb195
Jan 31, 2014
- Forgot new file for unit tests · f23b047f
  nkindlon authored 11 years ago
  
  f23b047f
- Corrections and unit tests for split bug. · 88ba7f18
  nkindlon authored 11 years ago
  
  88ba7f18
Jan 27, 2014
- Added another file to intersect unit tests for split blocks testing. · 0330f301
  nkindlon authored 11 years ago
  
  0330f301
Jan 23, 2014
- Update cluster.rst · 8f723401
  Aaron Quinlan authored 11 years ago
  
  8f723401
Jan 22, 2014
- New unit test for -split -wo · 69fda88a
  nkindlon authored 11 years ago
  
  69fda88a
Jan 21, 2014
- Fixed split bug, added field number accessibility. · 300e9249
  nkindlon authored 11 years ago
  
  300e9249