Commits · 88ba7f18f3d4a946f8939836fc7b57d1dfe977ca · R3 / legacy / bedtools2

Jan 31, 2014
- Corrections and unit tests for split bug. · 88ba7f18
  nkindlon authored 11 years ago
  
  88ba7f18
Jan 27, 2014
- Added another file to intersect unit tests for split blocks testing. · 0330f301
  nkindlon authored 11 years ago
  
  0330f301
Jan 22, 2014
- New unit test for -split -wo · 69fda88a
  nkindlon authored 11 years ago
  
  69fda88a
Jan 21, 2014
- Fixed split bug, added field number accessibility. · 300e9249
  nkindlon authored 11 years ago
  
  300e9249
Jan 13, 2014
- Merge remote-tracking branch 'upstream/master' · c5434105
  nkindlon authored 11 years ago
  
  c5434105
Jan 11, 2014
- tweak · ce2d411b
  arq5x authored 11 years ago
  
  ce2d411b
- [TST] new unit tests for proper field reporting for BED* intersections · 420159aa
  arq5x authored 11 years ago
  
  420159aa
- Merge pull request #20 from nkindlon/master · cf58c190
  Aaron Quinlan authored 11 years ago
  
  Changed handling of strand in records to allow non-strand strings in six...
  cf58c190
Jan 10, 2014
- Merge remote-tracking branch 'upstream/master' · 891f3683
  nkindlon authored 11 years ago
  
  891f3683
- Changed handling of strand in records to allow non-strand strings in sixth field of records. · 3baa8db2
  nkindlon authored 11 years ago
  
  3baa8db2
Jan 09, 2014
- Merge branch 'master' of https://github.com/arq5x/bedtools2 · 06dffce9
  arq5x authored 11 years ago
  
  06dffce9
- [BUG] fix extra TAB at EOL in the annotate tool. · 8e85251e
  arq5x authored 11 years ago
  
  8e85251e
Jan 08, 2014
- Update README.rst · 22917d83
  Aaron Quinlan authored 11 years ago
  
  22917d83
- Merge pull request #15 from nkindlon/master · 4b5d122d
  Aaron Quinlan authored 11 years ago
  
  Refactored Context class into Base and Derived classes for cleaner futur...
  4b5d122d
- Setting Release-Version v2.18.2 · 393fc3b9
  arq5x authored 11 years ago
  
  v2.18.2
  
  393fc3b9
- Refactored Context class into Base and Derived classes for cleaner future development. · 434901e5
  nkindlon authored 11 years ago
  
  434901e5
Jan 05, 2014
- ask travis to auto-run unit tests. · 8d5fa9ca
  arq5x authored 11 years ago
  
  8d5fa9ca
Jan 04, 2014
- tweak travis config · c1e45d3b
  arq5x authored 11 years ago
  
  c1e45d3b
- add travis config · a5a8afdb
  arq5x authored 11 years ago
  
  a5a8afdb
Jan 03, 2014
- Update README.rst · c856bd0e
  Aaron Quinlan authored 11 years ago
  
  c856bd0e
- Merge pull request #14 from nkindlon/master · 333b85c0
  Aaron Quinlan authored 11 years ago
  
  Added fix for Bam files with empty headers. Added test for this to unit ...
  333b85c0
- Added fix for Bam files with empty headers. Added test for this to unit test. · a16562f4
  nkindlon authored 11 years ago
  
  a16562f4
- [DOC] cleanup docs to facilitate man page creation. · 6d5a7587
  arq5x authored 11 years ago
  
  6d5a7587
Jan 02, 2014
- [DOC] fix docs typos · e5e5d751
  arq5x authored 11 years ago
  
  e5e5d751
Dec 19, 2013
- Merge pull request #7 from nkindlon/master · fe6b3098
  Aaron Quinlan authored 11 years ago
  
  Added -nobuf option and definition to intersect help menu.
  fe6b3098
- Added -nobuf option and definition to intersect help menu. · b2f01dc8
  nkindlon authored 11 years ago
  
  b2f01dc8
- Merge pull request #6 from nkindlon/master · 465f72d8
  Aaron Quinlan authored 11 years ago
  
  Changed input stream buffer to only 1Kb to improve performance for small...
  465f72d8
- Added -nobuf option, and changed flush to occur after every record if -nobuf is set. · 930ddf38
  nkindlon authored 11 years ago
  
  930ddf38
Dec 18, 2013
- Changed outbuf size constant to 16384 from 16386, which was a mistake. · bb49512d
  nkindlon authored 11 years ago
  
  bb49512d
- Corrected comment and constant for MAIN_BUF_READ_SIZE. · 284148c0
  nkindlon authored 11 years ago
  
  284148c0
- Changed input stream buffer to only 1Kb to improve performance for small files. · fba95089
  nkindlon authored 11 years ago
  
  fba95089
Dec 17, 2013
- Setting Release-Version v2.18.1 · 5173bf69
  arq5x authored 11 years ago
  
  v2.18.1
  
  5173bf69
- [BUG] fix compilation errors on CLANG and with pre-installed bamtools libs. · 16b8247c
  arq5x authored 11 years ago
  
  16b8247c
- Merge pull request #5 from nkindlon/master · 0524411f
  Aaron Quinlan authored 11 years ago
  
  Changed main Makefile to put LDFLAGS after -lbamtools. Fixes customized ...
  0524411f
Dec 16, 2013
- Changed main Makefile to put LDFLAGS after -lbamtools. Fixes customized... · 074a146c
  nkindlon authored 11 years ago
  
  Changed main Makefile to put LDFLAGS after -lbamtools. Fixes customized Bamtools link error when Bamtools already defined in /usr/lib.
  074a146c
- Merge pull request #4 from nkindlon/master · eea39090
  Aaron Quinlan authored 11 years ago
  
  ifdef'd out DualQueue and removed usages of it to fix compiler errors wi...
  eea39090
- ifdef'd out DualQueue and removed usages of it to fix compiler errors with clang on Mac OS X · a12d9422
  nkindlon authored 11 years ago
  
  a12d9422
Dec 15, 2013
- add citations · f7ec24d4
  arq5x authored 11 years ago
  
  f7ec24d4
Dec 13, 2013
- [DOC] fix subtract's option list: · d3f1ae59
  arq5x authored 11 years ago
  
  d3f1ae59
- Setting Release-Version v2.18.0 · 2a70433c
  arq5x authored 11 years ago
  
  v2.18.0
  
  2a70433c