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R3
legacy
bedtools2
Commits
b2f01dc8
Commit
b2f01dc8
authored
11 years ago
by
nkindlon
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Added -nobuf option and definition to intersect help menu.
parent
930ddf38
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src/intersectFile/intersectMain.cpp
+9
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9 additions, 1 deletion
src/intersectFile/intersectMain.cpp
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src/intersectFile/intersectMain.cpp
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b2f01dc8
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@@ -110,7 +110,15 @@ void intersect_help(void) {
cerr
<<
"
\t\t
across input files. Only applies when used with -sorted option."
<<
endl
<<
endl
;
cerr
<<
"
\t
-header
\t
"
<<
"Print the header from the A file prior to results."
<<
endl
<<
endl
;
cerr
<<
"
\t
-nobuf
\t
"
<<
"Disable buffered output. Using this option will cause each line"
<<
endl
;
cerr
<<
"
\t\t
of output to be printed as it is generated, rather than saved"
<<
endl
;
cerr
<<
"
\t\t
in a buffer. This will make printing large output files "
<<
endl
;
cerr
<<
"
\t\t
noticeably slower, but can be useful in conjunction with"
<<
endl
;
cerr
<<
"
\t\t
other software tools and scripts that need to process one"
<<
endl
;
cerr
<<
"
\t\t
line of bedtools output at a time."
<<
endl
<<
endl
;
cerr
<<
"Notes: "
<<
endl
;
cerr
<<
"
\t
(1) When a BAM file is used for the A file, the alignment is retained if overlaps exist,"
<<
endl
;
cerr
<<
"
\t
and exlcuded if an overlap cannot be found. If multiple overlaps exist, they are not"
<<
endl
;
...
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