- Dec 06, 2013
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nkindlon authored
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- Dec 05, 2013
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nkindlon authored
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- Nov 18, 2013
- Nov 14, 2013
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nkindlon authored
New unit tests for sort order enforcement, non-existant file. Also added performance test for file input and compression types.
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- Nov 13, 2013
- Nov 07, 2013
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nkindlon authored
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- Nov 06, 2013
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nkindlon authored
Fixed a bug in BamRecord::printUnmapped, added a unit test with with data file for unmapped Bam reads.
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- Nov 02, 2013
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nkindlon authored
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- Feb 13, 2013
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Brent Pedersen authored
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- Jan 29, 2013
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Aaron authored
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- Jan 14, 2013
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Aaron authored
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- Dec 27, 2012
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Aaron authored
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- Dec 26, 2012
- Dec 10, 2012
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Aaron authored
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- Nov 26, 2012
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Aaron authored
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- Nov 04, 2012
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Aaron authored
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Aaron authored
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Charles Plessy authored
In order to test bedtools after it is installed in /usr/bin, it is needed to override the BT variable in the shell scripts of the test suite. The following change achieves it in compliance with POSIX (tested with dash). -BT=../../bin/bedtools +BT=${BT-../../bin/bedtools}
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Charles Plessy authored
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- Nov 02, 2012
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Aaron authored
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- Oct 29, 2012
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Aaron authored
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Brent Pedersen authored
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Brent Pedersen authored
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Brent Pedersen authored
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- Oct 10, 2012
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Nathan Weeks authored
If "tac" doesn't exist (e.g., on non GNU/Linux systems like OS X & other BSDs), emulate with sed '1!G;h;$!d' (from http://www.catonmat.net/blog/sed-one-liners-explained-part-one/) Since the Makefile executes tests using "sh" instead of "bash", use the more portable "> obs 2>&1" instead of "&> obs" so the test will pass when /bin/sh isn't bash (e.g., on Debian-based Linux distributions, and most non-Linux *nix systems).
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- Sep 18, 2012
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Brent Pedersen authored
bedtools subcommands.
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- Aug 24, 2012
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Brent Pedersen authored
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- Aug 09, 2012
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Aaron authored
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- Jul 18, 2012
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Aaron authored
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- Jul 17, 2012
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Aaron authored
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- Jun 06, 2012
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Aaron authored
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- May 21, 2012
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Aaron authored
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- May 15, 2012
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Aaron authored
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- Mar 30, 2012
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Aaron authored
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- Feb 18, 2012
- Feb 16, 2012
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Aaron authored
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