Commits · 17ec9aa93aa96fedf0ff6424866f03204f09355e · R3 / legacy / bedtools2

Apr 17, 2014
- cleanup KeyListOps help formatting · c5d1e72d
  arq5x authored 10 years ago
  
  c5d1e72d
- add missing help menu items (-S -header) to merge · 4fd41ae5
  arq5x authored 10 years ago
  
  4fd41ae5
- allow merge -d to have negative values for minimum overlap. · d0fe42c2
  arq5x authored 10 years ago
  
  d0fe42c2
- Final unit tests for merge, including stranded merge bug fixes. · 1b866b6e
  nkindlon authored 10 years ago
  
  1b866b6e
Apr 16, 2014
- Unit tests and bug fixes for merge release · 5eb3b68c
  nkindlon authored 10 years ago
  
  5eb3b68c
Apr 15, 2014
- Handling empty files with headers · fe5ea0ed
  nkindlon authored 10 years ago
  
  fe5ea0ed
Apr 09, 2014
- [ENH] all shuffle with -incl to follow data distribution · 4642a149
  arq5x authored 10 years ago
  
  4642a149
Apr 08, 2014
- Merge converted to PFM, first check-in · f36d6db4
  nkindlon authored 10 years ago
  
  f36d6db4
Apr 05, 2014
- fix most filetype issues. intersect still raises error with empty files. · ed71c8e0
  arq5x authored 10 years ago
  
  ed71c8e0
Mar 25, 2014
- remove extraneous header tab · 377f1b11
  arq5x authored 11 years ago
  
  377f1b11
Mar 20, 2014
- just peak at first bit in isGzipFile() fix for issue46 · 6fbc3c26
  arq5x authored 11 years ago
  
  6fbc3c26
Mar 18, 2014
- Fixed slop bug when slop factor exceeds MAX signed int. · 80820201
  nkindlon authored 11 years ago
  
  80820201
Mar 06, 2014
- Setting Release-Version v2.19.1 · a3fefa28
  arq5x authored 11 years ago
  
  v2.19.1
  
  a3fefa28
- Setting Release-Version v2.19.1 · 732f6830
  arq5x authored 11 years ago
  
  732f6830
- Setting Release-Version v2.19.1 · 37190385
  arq5x authored 11 years ago
  
  37190385
Mar 04, 2014
- Fixed intersect bug so that bed query with Bam DB correctly gives bed output. Added unit test. · 95098092
  nkindlon authored 11 years ago
  
  95098092
Feb 28, 2014
- Refactored KeyListOps, Context, mapFile for KeyListOps re-usability by other tools. · 2268ee4f
  nkindlon authored 11 years ago
  
  2268ee4f
Feb 19, 2014
- Created new KeyListOps class to replace vectorOps. Converted map tool to this. · 77c1bdad
  nkindlon authored 11 years ago
  
  77c1bdad
Feb 09, 2014
- Setting Release-Version v2.19.0 · d677066e
  arq5x authored 11 years ago
  
  v2.19.0
  
  d677066e
- Setting Release-Version v2.19.0 · be3415c7
  arq5x authored 11 years ago
  
  be3415c7
- Setting Release-Version v2.19.0 · ec052061
  arq5x authored 11 years ago
  
  ec052061
Feb 06, 2014
- Added -split option to map help. · 85df2b4a
  nkindlon authored 11 years ago
  
  85df2b4a
- Removed unnecessary NULL checks on delete. · d0fb3059
  nkindlon authored 11 years ago
  
  d0fb3059
- Removed outdated comment · 14caf06b
  nkindlon authored 11 years ago
  
  14caf06b
- Refactored contexts for validation, added unit tests, enabled -plit for map. · b912d88c
  nkindlon authored 11 years ago
  
  b912d88c
Feb 03, 2014
- add -valueOnly option to jaccard · 952088e8
  arq5x authored 11 years ago
  
  952088e8
- typo on option -useFullHeader · 369bc723
  Timothée Flutre authored 11 years ago
  
  369bc723
Feb 02, 2014
- fix bug in merge output and cleanup jaccard test · 526119e7
  arq5x authored 11 years ago
  
  526119e7
- [ENH] correct Jaccard output header · b77e0ebb
  arq5x authored 11 years ago
  
  b77e0ebb
- fix conflict. · ce50a83e
  arq5x authored 11 years ago
  
  ce50a83e
- fix conflict. · 61a63f95
  arq5x authored 11 years ago
  
  61a63f95
Feb 01, 2014
- reduce QuickString DEFAULT_CAPACITY to 8 instead of 256 to save memory. · 87f72e54
  arq5x authored 11 years ago
  
  87f72e54
- add a Context for Map tool. · ebf9a72c
  arq5x authored 11 years ago
  
  ebf9a72c
- add methods to extract column from record by its col. number (2) · a45f98c0
  arq5x authored 11 years ago
  
  a45f98c0
- add methods to extract column from record by its col. number · 61b7a976
  arq5x authored 11 years ago
  
  61b7a976
- allow RecordOutputMgr to print a record followed by arbitray string · c380cf59
  arq5x authored 11 years ago
  
  c380cf59
- add nullValue and ColOp to ContextBase for Map · 8489f019
  arq5x authored 11 years ago
  
  8489f019
- map uses PFM. · 823bfa7f
  arq5x authored 11 years ago
  
  823bfa7f
- add option -fullHeader for fasta files · accf0a13
  Timothee Flutre authored 11 years ago
  
  accf0a13
Jan 31, 2014
- Corrections and unit tests for split bug. · 88ba7f18
  nkindlon authored 11 years ago
  
  88ba7f18