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# Synergistic effect of short- and long-read sequencing on functional meta-omics
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## Important info
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- [Manuscript](https://docs.google.com/document/d/1TmenUZGwTGU4wIljxwxprZ5L75So8hYSYL5QMzSH9_M/edit?usp=sharing)
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*NOTE: For further notes, e.g. preprocessing of raw reads, create new pages and add a link here*
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## Data
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- Metagenomic sequencing
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- Fecal sample from "generous donor B"
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- Short reads (Illumina) (SR)
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- Long reads (ONT) (LR)
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- Meta-omics
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- metagenomics (metaG)
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- metatrscriptomics (metaT)
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- metaproteomics (metaP)
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## Goal
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SR vs. LR vs. hybri compared w.r.t.
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- Genomic reconstruction
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- Plasmids
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- CRIPR arrays
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- Functional characterization
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- Peptide identification (w/ metaP)
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## Analysis
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- Preprocessing
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- SR
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- QC
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- LR
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- Base calling
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- QC
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- Assembly
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- SR
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- LR
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- Polishing
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- Hybrid
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- Annotation
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- Gene calling
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- Plasmid prediction
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- CRISPR arrays
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- AMR genes
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- Analysis
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- Figures,tables
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- Report
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