Raw data

iris:/mnt/isilon/projects/ecosystem_biology/ONT_pilot/

GDB sample: GDB_2019/
- GDB.2019.rawdata.md5sums.txt
- GDB.2019.rawdata.fast5.md5sums.txt
External data: external_data/
- external_data.stored.md5sums.txt
  - md5sum of stored files
- external_data.download.md5sums.txt
  - md5sum of files if downloaded automatically using the pipeline
- "stored" vs. "downloaded":
  - SRA files were downloaded manually: compared to automatic download the FASTQ headers are different (but the read quality scores and sequence are the same)
  - folder structure is different and file naming differs in some cases