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Update ONT_pilot_w_GDB_samples authored by Susheel Busi's avatar Susheel Busi
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ONT_pilot_w_GDB_samples.md
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......@@ -543,7 +543,19 @@ ln -s ../non_methylation_aware_results/assembly/metaspades/ONT3_MG_xx_Rashi_S11/
rm bwa* mmi* # removing non-essential files
metaquast.py --max-ref-number 0 --threads 24 *fa -o quast_comparision_meth_v_non_results
# downloaded all the folders to desktop at ~/Documents/Nanopore_ONT/.
rsync --rsh='ssh -p 8022' -auvp \
sbusi@access-iris.uni.lu:/mnt/lscratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/quast_methylation_v_non_comparison/quast_comparision_meth_v_non_results \
~/Downloads/.
rsync --rsh='ssh -p 8022' -auvp \
sbusi@access-iris.uni.lu:/mnt/lscratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/quast_non_mod/non_mod_2019_quast_results \
~/Downloads/.
rsync --rsh='ssh -p 8022' -auvp \
sbusi@access-iris.uni.lu:/mnt/lscratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/quast_methylation_aware/methylation_2019_quast_results \
~/Downloads/.
```
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