| ... | ... | @@ -563,4 +563,17 @@ git push |
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```
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mkdir slurm_files
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mv slurm* slurm_files/.
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``` |
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\ No newline at end of file |
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```
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##############################
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# Notes - for 2018_GDB data #
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##############################
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1. Flye does not produce metabat bins. Reason == only 2 contigs (less than 1500 bp) have coverages over 1.
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2. Should we adjust the "minCV" parameter for metabat?
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3. Added the snakemake "--keep-going" or "-k" flag to the launcher to finish the independent jobs, and restarted
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4. Need to fix checkm and gtdbktk runs
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5. CheckM was throwing file missing erros, so did the following:
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```
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cp /home/users/sbusi/apps/checkm/* /home/users/sbusi/.checkm/.
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```
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6. Use "checkm data setRoot" to specify the location of CheckM database files. |
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\ No newline at end of file |
