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srun -p interactive -t 4:00:00 --pty bash -i # interactive session
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# getting the "mappability" using a launcher script for the following:
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sbatch -t 1:00:00 -N 1 -n 4 get_mappability.sh
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sbatch -t 1:00:00 -N 1 -n 4 [get_mappability.sh](https://git-r3lab.uni.lu/susheel.busi/ont_pilot_gitlab/-/blob/master/2019_GDB/scripts/get_mappability.sh)
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>>>
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# metaG
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samtools flagstat sr/bwa_mem/ONT3_MG_xx_Rashi_S11_reads-x-ONT3_MG_xx_Rashi_S11-megahit_contigs.bam > sr_mappability.txt
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