Resolve "Continous integration tests"
Closes #207 (closed)
Edited by Piotr Gawron
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added 52 commits
- 2bf2e412 - unit test speed up (by using mock object instead of accessing external db)
- b40d4898 - persist module uses test db for unit testing
- a93361d5 - sbgnml module uses test db for unit testing
- a26aabe2 - tair should use ssl
- 0ea2ffbf - some comments
- 3783c589 - ensembl is in new version 7.0
- 1015d8b7 - support for vmh miriam types
- 33a16f7d - recon returns unsorted data entries for query - fix on best match
- a9b8c96b - allow recon to add chembl compound annotation
- 23889d16 - failsafe added when recon returns invalid response
- 60f9dfbf - xml parser allows to disable validation which speeds up the processing
- 1444d9aa - entrez parser is much faster (validation of xml from API is disabled)
- a4e797e5 - unit tests speed up
- ac1577ea - Tair sb has query limit by IP therefore unit tests using tair db are ignored for now
- 80d969b0 - taxonomy connector returns valid ids
- f16dc66d - unknown entries are also cached
- d573f5ec - debug removed
- 5cf7061b - unit test doesn't fail when other tests are run before
- ca3f245d - speed up of chemical unit test
- c90d6332 - using drug that is smaller to speed up a test
- a754fca3 - removing test that is redundant
- a99eabb4 - find drugs for SIRT3 is faster (less drugs are targetting this protein)
- 01a4fef7 - rusing SIRT3 target for filtering unit tests
- 3eccf8c4 - small refactor - methods extracted for better unit testing
- ab5be604 - redundant and non informative unit test removed
- e02627c1 - redundant test removed
- 144822ed - useless unit test removed
- afcaf36b - smaller example for getSuggestedQueryList
- d3f565bf - all unit tests can use cache query (unit tests will be run in clean db)
- 3b8526a3 - project id must be set set due to caching
- 41a3260e - speed up of unit test by using different example
- 1ea7b8df - drugbank xml parser removed
- 1b678cd3 - new implementation for resolving miriam resources fixed
- 10974f7c - empty test removed
- 1d79047b - non eed for exclusion - we run on clean db
- 006bfc05 - test example simplified
- f8f1ac1a - new pubmed version
- aebcbc01 - no need for turing off cache - we are running tests on clean db
- 8608fe03 - this exception is not thrown in a constructor anymore
- d22a54f1 - vmh metabolite name fixed
- b041aeec - vmh registry id introduced
- 683bc80c - default 0 value is sometimes problematic
- 33e570b5 - allow to not export warnings into notes
- 736532db - skip info about warnings when serializing
- 4a4c8956 - speed up of unit test
- 2ee13872 - test speed improvement
- 344e1391 - reactome unit tests fixed
- 46925a6d - unit test speed improved
- 1c308937 - unit tests are cleaner
- 6d668e29 - test db configuration
- f2823bb6 - by default test database is map_viewer (standard production db name), it can be…
- 07d8fa79 - backend continous integration tests
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- e29a2c59 - x11 driver addedx11 driver addedx11 driver addedx11 driver addedx11 driver…
added 1 commit
- 58dbe8f3 - path fixed to crash on systems with root privileges
added 1 commit
- b308fde8 - using folder that cannot be created because part of it is a file
added 2 commits
added 1 commit
- 289fa165 - revoke from postgres removed (user postgres doesn't have to exist)
added 2 commits
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- 159632b0 - queries can go through cache - it's running on clean database anyway
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