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Resolve "migration issue"

Merged Piotr Gawron requested to merge 1453-migration-issue into master
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+ 8
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@@ -95,7 +95,8 @@ public abstract class V16_0_0_20200930_2__generic_data_overlay_entry_data extend
return DEFAULT_GENOME_VERSION;
}
private void addEntries(Integer overlayId, Set<? extends DataOverlayEntry> entries, Context context) throws SQLException {
private void addEntries(Integer overlayId, Set<? extends DataOverlayEntry> entries, Context context)
throws SQLException {
for (DataOverlayEntry dataOverlayEntry : entries) {
String distinguisher = "GENERIC_DATA_OVERLAY";
if (dataOverlayEntry instanceof GeneVariantDataOverlayEntry) {
@@ -340,7 +341,11 @@ public abstract class V16_0_0_20200930_2__generic_data_overlay_entry_data extend
for (int i = 0; i < columns.length; i++) {
String column = columns[i].trim().toLowerCase();
String value = data[i];
String value = null;
//there might be some broken entries
if (data.length > i) {
value = data[i];
}
if (value != null && !value.trim().isEmpty()) {
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