Resolve "CellDesigner ignores all rdf description block in case it contains not-supported bqmodel:isDerivedFrom"

Closes #1281 (closed)

converter/src/main/java/lcsb/mapviewer/converter/annotation/XmlAnnotationParser.java

@@ -30,10 +30,21 @@ public class XmlAnnotationParser {
 
   private SimpleDateFormat dateFormat = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss");
 
+  private Set<MiriamRelationType> supportedRelationTypes = new HashSet<>();
+
   /**
    * Default constructor.
    */
   public XmlAnnotationParser() {
+    this(new ArrayList<>());
+  }
+
+  public XmlAnnotationParser(Collection<MiriamRelationType> supportedRelationTypes) {
+    if (supportedRelationTypes == null || supportedRelationTypes.size() == 0) {
+      this.supportedRelationTypes.addAll(Arrays.asList(MiriamRelationType.values()));
+    } else {
+      this.supportedRelationTypes.addAll(supportedRelationTypes);
+    }
   }
 
   /**
@@ -353,12 +364,20 @@ public class XmlAnnotationParser {
    */
   public String miriamDataToXmlString(MiriamData data) {
     StringBuilder result = new StringBuilder("");
-    result.append("<" + data.getRelationType().getStringRepresentation() + ">\n");
+    MiriamRelationType relationType;
+    if (supportedRelationTypes.contains(data.getRelationType())) {
+      relationType = data.getRelationType();
+    } else {
+      relationType = supportedRelationTypes.iterator().next();
+      logger.warn(data.getRelationType().getStringRepresentation() + " is not supported. Replacing with: "
+          + relationType.getStringRepresentation());
+    }
+    result.append("<" + relationType.getStringRepresentation() + ">\n");
     result.append("<rdf:Bag>\n");
     result.append("<rdf:li rdf:resource=\"" + data.getDataType().getUris().get(0) + ":"
         + data.getResource().replaceAll(":", "%3A") + "\"/>\n");
     result.append("</rdf:Bag>\n");
-    result.append("</" + data.getRelationType().getStringRepresentation() + ">\n");
+    result.append("</" + relationType.getStringRepresentation() + ">\n");
 
     return result.toString();
   }