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Commit d9dae2e1 authored by Nils Christian's avatar Nils Christian
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change line breaks to unix format

Packaging tools prefer the unix format.
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minerva (11.0.2) stable; urgency=medium minerva (11.0.2) stable; urgency=medium
* Bug fix: login issues when default page is in secure area * Bug fix: login issues when default page is in secure area
-- Piotr Gawron <piotr.gawron@uni.lu> Fri, 25 Sep 2017 12:00:00 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Fri, 25 Sep 2017 12:00:00 +0200
minerva (11.0.1) stable; urgency=medium minerva (11.0.1) stable; urgency=medium
* Bug fix: logout caused issues with session data * Bug fix: logout caused issues with session data
-- Piotr Gawron <piotr.gawron@uni.lu> Fri, 08 Sep 2017 12:00:00 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Fri, 08 Sep 2017 12:00:00 +0200
minerva (11.0.0) stable; urgency=medium minerva (11.0.0) stable; urgency=medium
* Bug fix: security issue - access to specific map can be restricted * Bug fix: security issue - access to specific map can be restricted
by the userlogin by the userlogin
* Bug fix: sbgn import * Bug fix: sbgn import
* Bug fix: mesh connector * Bug fix: mesh connector
* Rest API (documentation can be found here: * Rest API (documentation can be found here:
https://git-r3lab.uni.lu/piotr.gawron/minerva/blob/master/README.md) https://git-r3lab.uni.lu/piotr.gawron/minerva/blob/master/README.md)
* Selecting an element on the map shows info about it in the bottom left * Selecting an element on the map shows info about it in the bottom left
corner (when Search tab is not open) corner (when Search tab is not open)
* Upload of data overlays allows to upload just names of the proteins * Upload of data overlays allows to upload just names of the proteins
(or other elements), it can be done via file or just by typing in the (or other elements), it can be done via file or just by typing in the
proper text box proper text box
* Layout changes: the main one is that there are only 3 tab panels * Layout changes: the main one is that there are only 3 tab panels
(search, overlay, info), so it should be easier to navigate (search, overlay, info), so it should be easier to navigate
-- Piotr Gawron <piotr.gawron@uni.lu> Mon, 28 Aug 2017 12:00:00 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Mon, 28 Aug 2017 12:00:00 +0200
minerva (10.0.5) stable; urgency=medium minerva (10.0.5) stable; urgency=medium
* Bug fix: interacting drugs can be found for RNAs * Bug fix: interacting drugs can be found for RNAs
* Bug fix: error handling improved on map upload * Bug fix: error handling improved on map upload
* Bug fix: taxonomy ncbi server switched to https * Bug fix: taxonomy ncbi server switched to https
* Overlay presents description field if possible * Overlay presents description field if possible
-- Piotr Gawron <piotr.gawron@uni.lu> Sat, 04 Mar 2017 12:00:00 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Sat, 04 Mar 2017 12:00:00 +0200
minerva (10.0.4) stable; urgency=medium minerva (10.0.4) stable; urgency=medium
* Bug fix: overlays colors are centered in white (not black) * Bug fix: overlays colors are centered in white (not black)
* Bug fix: export to CellDesigner fixed * Bug fix: export to CellDesigner fixed
* Bug fix: DrugBank connector updated due to change in DrugBank website * Bug fix: DrugBank connector updated due to change in DrugBank website
-- Piotr Gawron <piotr.gawron@uni.lu> Thu, 29 Dec 2016 17:01:16 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Thu, 29 Dec 2016 17:01:16 +0200
minerva (10.0.3) stable; urgency=medium minerva (10.0.3) stable; urgency=medium
* Bug fix: login cannot contain whitespace * Bug fix: login cannot contain whitespace
* Bug fix: search for multiple drugs will not return more drugs than * Bug fix: search for multiple drugs will not return more drugs than
queried for queried for
* Bug fix: drug list for some proteins (like RHOA) hung webpage * Bug fix: drug list for some proteins (like RHOA) hung webpage
* Bug fix: comments on submaps issue * Bug fix: comments on submaps issue
* Bug fix: link to submap from comment panel * Bug fix: link to submap from comment panel
* Overlay coloring can be defined in Configuration * Overlay coloring can be defined in Configuration
-- Piotr Gawron <piotr.gawron@uni.lu> Thu, 15 Dec 2016 15:01:16 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Thu, 15 Dec 2016 15:01:16 +0200
minerva (10.0.2) stable; urgency=medium minerva (10.0.2) stable; urgency=medium
* Bug fix: markers for mirna targets visibility * Bug fix: markers for mirna targets visibility
-- Piotr Gawron <piotr.gawron@uni.lu> Thu, 29 Sep 2016 10:01:16 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Thu, 29 Sep 2016 10:01:16 +0200
minerva (10.0.1) stable; urgency=medium minerva (10.0.1) stable; urgency=medium
* Bug fix: export to image * Bug fix: export to image
* Bug fix: trigger reaction and physical stimulation reactions are no * Bug fix: trigger reaction and physical stimulation reactions are no
longer allowed (CellDesigner data model issue) longer allowed (CellDesigner data model issue)
* Bug fix: clicking on reactions in submaps * Bug fix: clicking on reactions in submaps
-- Piotr Gawron <piotr.gawron@uni.lu> Fri, 21 Sep 2016 13:01:16 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Fri, 21 Sep 2016 13:01:16 +0200
minerva (10) stable; urgency=medium minerva (10) stable; urgency=medium
* Project info tab available for users * Project info tab available for users
* Management of overlays in admin panel * Management of overlays in admin panel
* Bug fix: Visualization of text mining * Bug fix: Visualization of text mining
* Bug fix: Exception when accessing non-existing project * Bug fix: Exception when accessing non-existing project
* Bug fix: Zooming issue when searching for results on submaps * Bug fix: Zooming issue when searching for results on submaps
* Bug fix: Out of memory when caching a lot of data * Bug fix: Out of memory when caching a lot of data
* Bug fix: Corrupted drug names * Bug fix: Corrupted drug names
* Bug fix: Unexpected errors when uploading layouts * Bug fix: Unexpected errors when uploading layouts
* Bug fix: Coordinates in url * Bug fix: Coordinates in url
* Bug fix: Hiding left panel * Bug fix: Hiding left panel
* Bug fix: CellDesigner font size is processed properly * Bug fix: CellDesigner font size is processed properly
* Bug fix: Search by reaction id is not case sensitive * Bug fix: Search by reaction id is not case sensitive
-- Piotr Gawron <piotr.gawron@uni.lu> Mon, 22 Aug 2016 13:01:16 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Mon, 22 Aug 2016 13:01:16 +0200
minerva (9) stable; urgency=medium minerva (9) stable; urgency=medium
* Fix on install script of version 8 that crashed some new installations * Fix on install script of version 8 that crashed some new installations
-- Piotr Gawron <piotr.gawron@uni.lu> Wed, 29 Jun 2016 09:58:34 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Wed, 29 Jun 2016 09:58:34 +0200
minerva (8) stable; urgency=medium minerva (8) stable; urgency=medium
* Micro RNA interface * Micro RNA interface
* Toxic chemicals interdace * Toxic chemicals interdace
* Data sets (layouts) visualized dynamically in the browser * Data sets (layouts) visualized dynamically in the browser
* Reverse query for drugs, chemicals, micro RNAs interfaces * Reverse query for drugs, chemicals, micro RNAs interfaces
* Small bug fixes * Small bug fixes
-- Piotr Gawron <piotr.gawron@uni.lu> Thu, 14 Apr 2016 13:03:55 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Thu, 14 Apr 2016 13:03:55 +0200
minerva (7) stable; urgency=low minerva (7) stable; urgency=low
* Uploaded datasets are available for download * Uploaded datasets are available for download
* Entrez annotator * Entrez annotator
* Ensembl annotator * Ensembl annotator
* Valid/required annotations and used annotations saved in user profile * Valid/required annotations and used annotations saved in user profile
* Export to pdf/png/jpg/svg * Export to pdf/png/jpg/svg
* New web interface * New web interface
-- Piotr Gawron <piotr.gawron@uni.lu> Thu, 3 Dec 2015 22:00:00 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Thu, 3 Dec 2015 22:00:00 +0200
minerva (6) stable; urgency=low minerva (6) stable; urgency=low
* Searching by annotations * Searching by annotations
* Errors from parsing data forwarded to client * Errors from parsing data forwarded to client
* Notification email system added * Notification email system added
* Warnings are downloadable * Warnings are downloadable
* Complex map (composed from many small maps) * Complex map (composed from many small maps)
* Visualization of Recon specific annotations * Visualization of Recon specific annotations
* Versioning system * Versioning system
* Galaxy connector * Galaxy connector
* Miriam types report * Miriam types report
* Advanced annotation options * Advanced annotation options
* Uniprot annotation module * Uniprot annotation module
* Customized validation of miriam annotations * Customized validation of miriam annotations
* Recon annotation service * Recon annotation service
* Bug fix: Data autofill problem in user management * Bug fix: Data autofill problem in user management
* Bug fix: User privileges for adding project * Bug fix: User privileges for adding project
* Bug fix: Problem with some miriam entries in RDF format * Bug fix: Problem with some miriam entries in RDF format
* Bug fix: Reporting of drawing problems * Bug fix: Reporting of drawing problems
* Bug fix: Visualization of posttranslationa modification * Bug fix: Visualization of posttranslationa modification
* Bug fix: Drugbank problem after update of Drugbank interface * Bug fix: Drugbank problem after update of Drugbank interface
* Bug fix: Session scope fixed (browsing many maps at the same time) * Bug fix: Session scope fixed (browsing many maps at the same time)
* Bug fix: Asynchronous removing/adding maps * Bug fix: Asynchronous removing/adding maps
* Bug fix: Export to CellDesigner rarely produced corrupted CellDesigner file * Bug fix: Export to CellDesigner rarely produced corrupted CellDesigner file
* Bug fix: Recon annotations of reactions * Bug fix: Recon annotations of reactions
* Bug fix: Login problem when browsing not default map * Bug fix: Login problem when browsing not default map
* Bug fix: Multimers are available for every element * Bug fix: Multimers are available for every element
-- Piotr Gawron <piotr.gawron@uni.lu> Tue, 21 Jul 2015 22:00:00 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Tue, 21 Jul 2015 22:00:00 +0200
minerva (5) stable; urgency=low minerva (5) stable; urgency=low
* Additional checkboxes in upload model: annotate automatically, cache data, verify annotations * Additional checkboxes in upload model: annotate automatically, cache data, verify annotations
* Popup window in admin panel that list warnings * Popup window in admin panel that list warnings
* Information about build * Information about build
* Parsing and annotation warnings for models in admin panel * Parsing and annotation warnings for models in admin panel
* Custom reaction visualization in upload overlay * Custom reaction visualization in upload overlay
* Bug fix: Problem with touch interface on Windows 8.1 * Bug fix: Problem with touch interface on Windows 8.1
* Bug fix: Google Maps API problem with floating bubbles * Bug fix: Google Maps API problem with floating bubbles
* Bug fix: Error handling in admin panel * Bug fix: Error handling in admin panel
* Bug fix: Reaction color in CellDesigner file * Bug fix: Reaction color in CellDesigner file
* Bug fix: Reaction line width * Bug fix: Reaction line width
-- Piotr Gawron <piotr.gawron@uni.lu> Thu, 18 Dec 2014 22:00:00 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Thu, 18 Dec 2014 22:00:00 +0200
minerva (4) stable; urgency=low minerva (4) stable; urgency=low
* Export of the part of the map into CellDesigner file * Export of the part of the map into CellDesigner file
* Logo files managable via config webpage * Logo files managable via config webpage
* Import data from GO * Import data from GO
* Custom overlay upload * Custom overlay upload
* Additional structural information imported from annotation service * Additional structural information imported from annotation service
* Bug fix: Fonts and lines in hierarchical view * Bug fix: Fonts and lines in hierarchical view
* Bug fix: Visualization of residues in rna, antisense rna, proteins * Bug fix: Visualization of residues in rna, antisense rna, proteins
* Bug fix: Problem with touching bubbles on touch interface * Bug fix: Problem with touching bubbles on touch interface
* Bug fix: Problem with special UTF-8 characters in CellDesigner file * Bug fix: Problem with special UTF-8 characters in CellDesigner file
* Bug fix: Problem with users and session expire * Bug fix: Problem with users and session expire
* Bug fix: Export problem * Bug fix: Export problem
-- Piotr Gawron <piotr.gawron@uni.lu> Thu, 11 Sep 2014 22:00:00 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Thu, 11 Sep 2014 22:00:00 +0200
minerva (3) stable; urgency=low minerva (3) stable; urgency=low
* Drug targeting interface * Drug targeting interface
* Export to CellDesigner * Export to CellDesigner
* Status page of all dependent services * Status page of all dependent services
* Configuration page * Configuration page
-- Piotr Gawron <piotr.gawron@uni.lu> Thu, 5 Jun 2014 22:00:00 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Thu, 5 Jun 2014 22:00:00 +0200
minerva (2) stable; urgency=low minerva (2) stable; urgency=low
* Upload of the CellDesigner map * Upload of the CellDesigner map
* Bug fix: Problem with touch interface after update of browsers engine * Bug fix: Problem with touch interface after update of browsers engine
* Bug fix: Problem in Safari when searching for elements * Bug fix: Problem in Safari when searching for elements
-- Piotr Gawron <piotr.gawron@uni.lu> Wed, 2 Apr 2014 22:00:00 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Wed, 2 Apr 2014 22:00:00 +0200
minerva (1) stable; urgency=low minerva (1) stable; urgency=low
* Initial release * Initial release
-- Piotr Gawron <piotr.gawron@uni.lu> Wed, 4 Dec 2013 22:00:00 +0200 -- Piotr Gawron <piotr.gawron@uni.lu> Wed, 4 Dec 2013 22:00:00 +0200
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