move clipboard to celldesigner plugin module (it cannot be used on server side)

.gitlab-ci.yml

@@ -31,7 +31,7 @@ test:frontend:
     - npm test
 
 .jdk_8_template: &jdk_8_definition
-  image: maven:3.6.0-jdk-8
+  image: maven:3.8.6-jdk-8
   services:
     - postgres:9.6
   stage: test
@@ -61,11 +61,6 @@ test:frontend:
 .test_backend_commons_template:
   script: &test_backend_commons_definition
 #xvfb is for X11 connection used by some parts of the java code: https://stackoverflow.com/a/47575851/1127920
-    - apt-get update
-    - DEBIAN_FRONTEND=noninteractive apt-get install -y xvfb
-    - Xvfb :99 &
-    - export DISPLAY=:99
-
     - mvn -DskipTests=true clean install -pl commons -am
     - mvn test -pl commons
     - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' commons/target/site/jacoco/jacoco.csv

CellDesigner-plugin/src/main/java/lcsb/mapviewer/cdplugin/copypaste/CopyAction.java

@@ -8,7 +8,6 @@ import jp.sbi.celldesigner.plugin.PluginReaction;
 import jp.sbi.celldesigner.plugin.PluginSBase;
 import jp.sbi.celldesigner.plugin.PluginSpecies;
 import jp.sbi.celldesigner.plugin.PluginSpeciesAlias;
-import lcsb.mapviewer.common.SystemClipboard;
 import lcsb.mapviewer.common.exception.InvalidXmlSchemaException;
 
 /**

CellDesigner-plugin/src/main/java/lcsb/mapviewer/cdplugin/copypaste/PasteAction.java

@@ -11,7 +11,6 @@ import jp.sbi.celldesigner.plugin.PluginSBase;
 import jp.sbi.celldesigner.plugin.PluginSpecies;
 import jp.sbi.celldesigner.plugin.PluginSpeciesAlias;
 import lcsb.mapviewer.common.Pair;
-import lcsb.mapviewer.common.SystemClipboard;
 import lcsb.mapviewer.converter.annotation.XmlAnnotationParser;
 import lcsb.mapviewer.model.map.MiriamData;
 

commons/src/main/java/lcsb/mapviewer/common/SystemClipboard.java → CellDesigner-plugin/src/main/java/lcsb/mapviewer/cdplugin/copypaste/SystemClipboard.java

-package lcsb.mapviewer.common;
+package lcsb.mapviewer.cdplugin.copypaste;
 
 import java.awt.Toolkit;
 import java.awt.datatransfer.Clipboard;

CellDesigner-plugin/src/test/java/lcsb/mapviewer/cdplugin/copypaste/AllCopyPasteTests.java

@@ -9,6 +9,7 @@ import org.junit.runners.Suite.SuiteClasses;
     CopyPasteAbstractActionTest.class,
     CopyPastePluginTest.class,
     PasteActionTest.class,
+    SystemClipboardTest.class,
 })
 public class AllCopyPasteTests {
 

CellDesigner-plugin/src/test/java/lcsb/mapviewer/cdplugin/copypaste/CopyActionTest.java

@@ -8,7 +8,6 @@ import org.mockito.Mockito;
 
 import jp.sbi.celldesigner.plugin.PluginListOf;
 import lcsb.mapviewer.cdplugin.CdPluginFunctions;
-import lcsb.mapviewer.common.SystemClipboard;
 
 public class CopyActionTest extends CdPluginFunctions {
 

CellDesigner-plugin/src/test/java/lcsb/mapviewer/cdplugin/copypaste/CopyPastePluginTest.java

@@ -11,7 +11,6 @@ import org.mockito.Mockito;
 
 import jp.sbi.celldesigner.plugin.PluginListOf;
 import lcsb.mapviewer.cdplugin.CdPluginFunctions;
-import lcsb.mapviewer.common.SystemClipboard;
 
 public class CopyPastePluginTest extends CdPluginFunctions {
 

CellDesigner-plugin/src/test/java/lcsb/mapviewer/cdplugin/copypaste/PasteActionTest.java

@@ -13,7 +13,6 @@ import jp.sbi.celldesigner.plugin.PluginReaction;
 import jp.sbi.celldesigner.plugin.PluginSpecies;
 import jp.sbi.celldesigner.plugin.PluginSpeciesAlias;
 import lcsb.mapviewer.cdplugin.CdPluginFunctions;
-import lcsb.mapviewer.common.SystemClipboard;
 
 public class PasteActionTest extends CdPluginFunctions {
 

commons/src/test/java/lcsb/mapviewer/common/SystemClipboardTest.java → CellDesigner-plugin/src/test/java/lcsb/mapviewer/cdplugin/copypaste/SystemClipboardTest.java

-package lcsb.mapviewer.common;
+package lcsb.mapviewer.cdplugin.copypaste;
 
 import static org.junit.Assert.assertEquals;
 import static org.junit.Assert.assertNull;
@@ -14,7 +14,9 @@ import org.junit.After;
 import org.junit.Before;
 import org.junit.Test;
 
-public class SystemClipboardTest extends CommonTestFunctions {
+import lcsb.mapviewer.cdplugin.CdPluginFunctions;
+
+public class SystemClipboardTest extends CdPluginFunctions {
 
   @Before
   public void setUp() throws Exception {

commons/src/test/java/lcsb/mapviewer/common/AllCommonTests.java

@@ -17,7 +17,6 @@ import lcsb.mapviewer.common.geometry.AllGeometryTests;
     MimeTypeTest.class,
     ObjectUtilsTest.class,
     PairTest.class,
-    SystemClipboardTest.class,
     TextFileUtilsTest.class,
     XmlParserTest.class,
 })