species modifications changed in hierarchical structure (ca4d2258) · Commits · minerva / core

Commit ca4d2258 authored 6 years ago by Piotr Gawron

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species modifications changed in hierarchical structure

parent a83396a1

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converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/CellDesignerElementCollection.java 11 additions, 12 deletions

...ter/model/celldesigner/CellDesignerElementCollection.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/structure/fields/CellDesignerGeneRegion.java 2 additions, 2 deletions

...celldesigner/structure/fields/CellDesignerGeneRegion.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/structure/fields/CellDesignerModificationResidue.java 3 additions, 2 deletions

...ner/structure/fields/CellDesignerModificationResidue.java
converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/structure/fields/CellDesignerRnaRegion.java 1 addition, 1 deletion

.../celldesigner/structure/fields/CellDesignerRnaRegion.java
converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/ComplexParserTests.java 15 additions, 10 deletions

...ewer/converter/model/celldesigner/ComplexParserTests.java
converter-CellDesigner/src/test/java/lcsb/mapviewer/converter/model/celldesigner/species/GeneXmlParserTest.java 2 additions, 2 deletions

...nverter/model/celldesigner/species/GeneXmlParserTest.java
converter-SBGNML/src/main/java/lcsb/mapviewer/converter/model/sbgnml/SbgnmlXmlExporter.java 9 additions, 5 deletions

...b/mapviewer/converter/model/sbgnml/SbgnmlXmlExporter.java
converter-SBGNML/src/main/java/lcsb/mapviewer/converter/model/sbgnml/SbgnmlXmlParser.java 1 addition, 1 deletion

...csb/mapviewer/converter/model/sbgnml/SbgnmlXmlParser.java
converter-graphics/src/main/java/lcsb/mapviewer/converter/graphics/bioEntity/element/species/GeneConverter.java 38 additions, 34 deletions

...ter/graphics/bioEntity/element/species/GeneConverter.java
converter-graphics/src/main/java/lcsb/mapviewer/converter/graphics/bioEntity/element/species/ProteinConverter.java 26 additions, 22 deletions

.../graphics/bioEntity/element/species/ProteinConverter.java
converter-graphics/src/main/java/lcsb/mapviewer/converter/graphics/bioEntity/element/species/RnaConverter.java 37 additions, 34 deletions

...rter/graphics/bioEntity/element/species/RnaConverter.java
model/src/main/java/lcsb/mapviewer/model/map/species/field/AbstractRegionModification.java 83 additions, 0 deletions

...r/model/map/species/field/AbstractRegionModification.java
model/src/main/java/lcsb/mapviewer/model/map/species/field/AbstractSiteModification.java 51 additions, 0 deletions

...wer/model/map/species/field/AbstractSiteModification.java
model/src/main/java/lcsb/mapviewer/model/map/species/field/CodingRegion.java 11 additions, 53 deletions

.../lcsb/mapviewer/model/map/species/field/CodingRegion.java
model/src/main/java/lcsb/mapviewer/model/map/species/field/ModificationResidue.java 1 addition, 38 deletions

...apviewer/model/map/species/field/ModificationResidue.java
model/src/main/java/lcsb/mapviewer/model/map/species/field/ModificationSite.java 20 additions, 5 deletions

...b/mapviewer/model/map/species/field/ModificationSite.java
model/src/main/java/lcsb/mapviewer/model/map/species/field/ProteinBindingDomain.java 9 additions, 53 deletions

...pviewer/model/map/species/field/ProteinBindingDomain.java
model/src/main/java/lcsb/mapviewer/model/map/species/field/Residue.java 9 additions, 3 deletions

.../java/lcsb/mapviewer/model/map/species/field/Residue.java
model/src/test/java/lcsb/mapviewer/model/map/species/GeneComparatorTest.java 2 additions, 1 deletion

.../lcsb/mapviewer/model/map/species/GeneComparatorTest.java
model/src/test/java/lcsb/mapviewer/model/map/species/ProteinComparatorTest.java 2 additions, 0 deletions

...sb/mapviewer/model/map/species/ProteinComparatorTest.java

with 333 additions and 278 deletions

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