Update README.md

README.md

@@ -243,10 +243,10 @@ curl -X GET --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" http://pg-sandbox.uni.lu/mine
 	* Method: GET
 	* Parameters:
 		* `projectId` - identifier of the project
-    * `modelId` - identifier of the (sub)map in the project or wildcard '*' character 
+        * `modelId` - identifier of the (sub)map in the project or wildcard '*' character 
 		* `coordinates` - coordinates of the point on (sub)map
-	  * `columns` (\*) - set of columns for each result. Possible values are: title, type, content, removed, coord, modelId, elementId, id, pinned, author, email, 
-	  * `removed` (\*) - if defined then removed paramter must match.
+		* `columns` (\*) - set of columns for each result. Possible values are: title, type, content, removed, coord, modelId, elementId, id, pinned, author, email, 
+		* `removed` (\*) - if defined then removed paramter must match.
 	* Example: TODO
 
 * Create element comment 
@@ -254,7 +254,7 @@ curl -X GET --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" http://pg-sandbox.uni.lu/mine
 	* Method: POST
 	* Parameters: 
 		* `projectId` - identifier of the project
-    * `modelId` - identifier of the (sub)map in the project 
+		* `modelId` - identifier of the (sub)map in the project 
 		* `elementId` - identifier of the element to be commented 
 		* `name` - name of the author
 		* `email` - email of the author
@@ -271,7 +271,7 @@ curl -X POST --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" --data "name=testComment&ema
 	* Method: POST
 	* Parameters: 
 		* `projectId` - identifier of the project
-    * `modelId` - identifier of the (sub)map in the project 
+		* `modelId` - identifier of the (sub)map in the project 
 		* `reactionId` - identifier of the reaction
 		* `name` - name of the author
 		* `email` - email of the author
@@ -289,7 +289,7 @@ curl -X POST --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" --data "name=testComment&ema
 	* Method: GET
 	* Parameters:
 		* `projectId` - identifier of the project
-    * `modelId` - identifier of the (sub)map in the project 
+		* `modelId` - identifier of the (sub)map in the project 
 		* `name` - name of the author
 		* `email` - email of the author
 		* `content` - content of the comment
@@ -304,10 +304,10 @@ curl -X POST --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" --data "name=testComment&ema
 * URL:	`/projects/{projectId}/drugs:search` 
 * Method: GET
 * Parameters:
-	* `projectId` - identifier of the project
-  * `columns` (\*) - set of columns for each result. Possible values are: name, references, description, bloodBrainBarrier, brandNames, synonyms, id, targets, 
-  * `query` (\*) - drug name or synonym
-  * `target` (\*) - target for which we are lookig for drugs. Target is defined as TYPE:ID. For example "ALIAS:534" is searching for drugs that target Alias with id=534. 
+    * `projectId` - identifier of the project
+    * `columns` (\*) - set of columns for each result. Possible values are: name, references, description, bloodBrainBarrier, brandNames, synonyms, id, targets, 
+    * `query` (\*) - drug name or synonym
+    * `target` (\*) - target for which we are lookig for drugs. Target is defined as TYPE:ID. For example "ALIAS:534" is searching for drugs that target Alias with id=534. 
 * Example:
 ```
 curl -X GET --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" http://pg-sandbox.uni.lu/minerva/api/projects/pdmap_dec15/drugs:search?query=aspirin
@@ -318,10 +318,10 @@ curl -X GET --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" http://pg-sandbox.uni.lu/mine
 * URL:	`/projects/{projectId}/miRnas:search` 
 * Method: GET
 * Parameters: 
-	* `projectId` - identifier of the project
-  * `columns` (\*) - set of columns for each result. Possible values are: name, id, targets, 
-  * `query` (\*) - mirna id
-  * `target` (\*) - target for which we are lookig for drugs. Target is defined as TYPE:ID. For example "ALIAS:534" is searching for drugs that target Alias with id=534. 
+    * `projectId` - identifier of the project
+    * `columns` (\*) - set of columns for each result. Possible values are: name, id, targets, 
+    * `query` (\*) - mirna id
+    * `target` (\*) - target for which we are lookig for drugs. Target is defined as TYPE:ID. For example "ALIAS:534" is searching for drugs that target Alias with id=534. 
 * Example:
 ```
 curl -X GET --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" http://pg-sandbox.uni.lu/minerva/api/projects/pdmap_dec15/miRnas:search?query=hsa-miR-125a-3p
@@ -334,7 +334,7 @@ curl -X GET --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" http://pg-sandbox.uni.lu/mine
 * Method: GET
 * Parameters: 
 	* `projectId` - identifier of the project
-  * `modelId` - identifier of the (sub)map in the project or wildcard '*' character 
+    * `modelId` - identifier of the (sub)map in the project or wildcard '\*' character 
 	* `start` (\*) - first element to be return when pagination is on (default 0)
 	* `length` (\*) - how many publication we want to retrieve (default 10)
 	
@@ -359,10 +359,10 @@ curl -X GET --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" http://pg-sandbox.uni.lu/mine
 	* Method: POST
 	* Parameters: 
 		* `projectId` - identifier of the project
-	  * `name` - name of the data overlay
-	  * `content` - content of the file that is uploaded with definition what should be visible where
-	  * `description` - short desription of the data overlay
-	  * `filename` - name of the file that should be used when downloading the source
+		* `name` - name of the data overlay
+		* `content` - content of the file that is uploaded with definition what should be visible where
+		* `description` - short desription of the data overlay
+		* `filename` - name of the file that should be used when downloading the source
 	* Example:
 ```
 curl -X POST --data "content=name%09color%0ACAPN1%09%2300FF00%0APARK7%09%23AC0000&description=test%20desc&filename=test.txt&name=test%20nam" --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" http://pg-sandbox.uni.lu/minerva/api/projects/pdmap_dec15/overlays/
@@ -375,14 +375,14 @@ curl -X POST --data "content=name%09color%0ACAPN1%09%2300FF00%0APARK7%09%23AC000
 		* `projectId` - identifier of the project
 		* `overlayId` - identifier of data overlay
 	* Body: json with updated overlay
-```	
-	 {
-	  "overlay": {
-	    "name" : name, 
-	    "description" : description
-	    } 
-	 }
-```	 
+
+{
+  "overlay": {
+    "name" : name, 
+    "description" : description
+  } 
+}
+
 	* Example:
 ```
 curl -X PATCH --data "{\"overlay\":{\"name\":\"test\", \"description\":\"test2\"}}" --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" http://pg-sandbox.uni.lu/minerva/api/projects/pdmap_dec15/overlays/3203/
@@ -437,7 +437,7 @@ curl -X GET --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" http://pg-sandbox.uni.lu/mine
 	* Method: GET
 	* Parameters:
 		* `projectId` - identifier of the project
-    * `modelId` - identifier of the (sub)map in the project 
+		* `modelId` - identifier of the (sub)map in the project 
 		* `overlayId` - identifier of data overlay
 		* `reactionId` - identifier of the reaction
 	* Example:
@@ -450,7 +450,7 @@ curl -X GET --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" http://pg-sandbox.uni.lu/mine
 	* Method: GET
 	* Parameters:
 		* `projectId` - identifier of the project
-    * `modelId` - identifier of the (sub)map in the project 
+		* `modelId` - identifier of the (sub)map in the project 
 		* `overlayId` - identifier of data overlay
 		* `elementId` - identifier of the element
 	* Example: