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Commit b678426d authored by Piotr Gawron's avatar Piotr Gawron
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test file simplified

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reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGenomeEncodedEntityParser.java
+ 1
− 1
View file @ b678426d
......@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.GenomeEncodedEntityColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
* "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=GenomeEncodedEntity"
* >GenomeEncodedEntity</a> object.
......
reactome/testFiles/small/diablo_xiap_casp9.xml
+ 0
− 219
View file @ b678426d
......@@ -443,225 +443,6 @@ X-linked inhibitor of apoptosis
<title/>
</head>
<body>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
<rdf:Description rdf:about="#s316">
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:592"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:21722859"/>
</rdf:Bag>
</bqbiol:isVersionOf>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.genes:hsa:842"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:8663294"/>
</rdf:Bag>
</bqbiol:isVersionOf>
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:17237824"/>
</rdf:Bag>
</bqbiol:isVersionOf>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:1511"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbigene:842"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:refseq:NP_001220.2"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:panther.family:PTHR10454"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:9390557"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbigene:56616"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pharmgkb.pathways:PA26094"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:refseq:NP_127463.2"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:hgnc:21528"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:panther.family%3APept_C14_p45"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:refseq:NP_001158.2"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:reactome:REACT_4472.1"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.genes:hsa%3A331"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:21722859"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:8663294"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pharmgkb.pathways:PA162409317"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:8552191"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.genes:hsa%3A842"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:reactome:REACT_5327"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:8654366"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:9390557"/>
</rdf:Bag>
</bqbiol:isVersionOf>
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:12749848"/>
</rdf:Bag>
</bqbiol:isVersionOf>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:refseq:NP_620307.1"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.genes:hsa:56616"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:17237824"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:reactome:REACT_5246"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:panther.family:Pept_C14_p45"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:ncbigene:331"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.genes:hsa%3A56616"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:8654366"/>
</rdf:Bag>
</bqbiol:isVersionOf>
<bqbiol:isDescribedBy>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:12749848"/>
</rdf:Bag>
</bqbiol:isDescribedBy>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:panther.family%3APTHR10454"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:kegg.genes:hsa:331"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:reactome:REACT_5499"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:refseq:NP_063940.1"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:isVersionOf>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pubmed:8552191"/>
</rdf:Bag>
</bqbiol:isVersionOf>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:refseq:NP_001191330.1"/>
</rdf:Bag>
</bqbiol:hasVersion>
<bqbiol:hasVersion>
<rdf:Bag>
<rdf:li rdf:resource="urn:miriam:pharmgkb.pathways:PA25361"/>
</rdf:Bag>
</bqbiol:hasVersion>
</rdf:Description>
</rdf:RDF>
</body>
</html>
</notes>
......
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